RNA–Protein interactions for RNA: ENST00000583649.1

CASC3-208, Transcript of CASC3, exon junction complex subunit, human

TSL 3

Gene CASC3, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC3-208	ENST00000583649	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	THEG	Q9P2T0	379 aa		13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	HCN4	Q9Y3Q4	1203 aa		13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.81	□□□□□ -0.2
CASC3-208	ENST00000583649	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	MRPS5	P82675	430 aa	Known RBP	13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	EXOSC9	Q06265	439 aa	Known RBP	13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	CCDC174	Q6PII3	467 aa		13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	ERICH6	Q7L0X2	663 aa		13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	KLHDC4	Q8TBB5	520 aa		13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	ASB2	Q96Q27	587 aa		13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	UHRF1	Q96T88	793 aa	Predicted RBP	13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	DHX36	Q9H2U1	1008 aa	Known RBP	13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	PI4KB	Q9UBF8	816 aa		13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	TACC3	Q9Y6A5	838 aa		13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	MROH7-TTC4	A0A0A0MT08	1334 aa		13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	MYH13	Q9UKX3	1938 aa		13.8	□□□□□ -0.2
CASC3-208	ENST00000583649	LOC285556	D6RIA3	1793 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	SLC15A5	A6NIM6	579 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	ZBTB22	O15209	634 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	MYCN	P04198	464 aa	Predicted RBP	13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	HOXD11	P31277	338 aa	Predicted RBP	13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	WDR63	Q8IWG1	891 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	ANKRD44	Q8N8A2	993 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	ADAMTS19	Q8TE59	1207 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	TXNRD2	Q9NNW7	524 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	DDX4	Q9NQI0	724 aa	Known RBP	13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	SLC5A4	Q9NY91	659 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	RBPJL	Q9UBG7	517 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	RABGAP1	Q9Y3P9	1069 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	RFX7	Q2KHR2	1363 aa		13.79	□□□□□ -0.2
CASC3-208	ENST00000583649	EYS	Q5T1H1	3165 aa		13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	GPR75-ASB3	A0A0A6YYF3	556 aa		13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	FAM196B	A6NMK8	535 aa		13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	AKNAD1	Q5T1N1	836 aa		13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	PORCN	Q9H237	461 aa		13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	ZNF576	Q9H609	170 aa		13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	HDAC5	Q9UQL6	1122 aa		13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	PDS5A	Q29RF7	1337 aa	Known RBP	13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	MAST2	Q6P0Q8	1798 aa		13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	PHIP	Q8WWQ0	1821 aa		13.78	□□□□□ -0.2
CASC3-208	ENST00000583649	CIAO1	O76071	339 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	RAG1	P15918	1043 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	DNAJB2	P25686	324 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	GRIN2C	Q14957	1233 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	TRIM60	Q495X7	471 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	GJC2	Q5T442	439 aa	Predicted RBP	13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	C1orf53	Q5VUE5	145 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L2	Q6R6M4	530 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	ATF7IP	Q6VMQ6	1270 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	DPP9	Q86TI2	863 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	PPM1E	Q8WY54	764 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	TIFA	Q96CG3	184 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	RAPGEFL1	Q9UHV5	662 aa		13.77	□□□□□ -0.21
CASC3-208	ENST00000583649	HOXC6	P09630	235 aa		13.76	□□□□□ -0.21
CASC3-208	ENST00000583649	PTPRE	P23469	700 aa		13.76	□□□□□ -0.21
CASC3-208	ENST00000583649	IL15	P40933	162 aa	Predicted RBP	13.76	□□□□□ -0.21
CASC3-208	ENST00000583649	PHKA1	P46020	1223 aa		13.76	□□□□□ -0.21
CASC3-208	ENST00000583649	FPGS	Q05932	587 aa		13.76	□□□□□ -0.21
CASC3-208	ENST00000583649	AAK1	Q2M2I8	961 aa		13.76	□□□□□ -0.21
CASC3-208	ENST00000583649		Q3C1V9	767 aa		13.76	□□□□□ -0.21
CASC3-208	ENST00000583649	CCDC102B	Q68D86	513 aa		13.76	□□□□□ -0.21
CASC3-208	ENST00000583649	PDLIM7	Q9NR12	457 aa		13.76	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L15	C9J2P7	530 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L13	C9JLJ4	530 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L11	C9JVI0	530 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L18	D6R9N7	530 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L22	D6RA61	530 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L17	D6RBQ6	530 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L19	D6RCP7	530 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L20	D6RJB6	530 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	BAG3	O95817	575 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	CLTB	P09497	229 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	SLURP2	P0DP57	97 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	PLCG2	P16885	1265 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	USP14	P54578	494 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	MECOM	Q03112	1051 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	USP17L24	Q0WX57	530 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	SNX17	Q15036	470 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	CCDC129	Q6ZRS4	1044 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	FEZ1	Q99689	392 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	LAMA2	P24043	3122 aa	Known RBP	13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	PLXNB2	O15031	1838 aa		13.75	□□□□□ -0.21
CASC3-208	ENST00000583649	MYH2	Q9UKX2	1941 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	SEPT4	O43236	478 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	STRN	O43815	780 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	CYP2C19	P33261	490 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	RHBDL3	P58872	404 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	MVP	Q14764	893 aa	Known RBP	13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	TEX11	Q8IYF3	940 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	USP38	Q8NB14	1042 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	SIL1	Q9H173	461 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	AKAP2	Q9Y2D5	859 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	PRUNE2	Q8WUY3	3088 aa		13.74	□□□□□ -0.21
CASC3-208	ENST00000583649	TTC28	Q96AY4	2481 aa		13.73	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms