RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 SFRP5Q5T4F7 317 aa6.75□□□□□ -1.33
SMCHD1-209ENST00000583441 KIAA0319Q5VV43 1072 aa6.75□□□□□ -1.33
SMCHD1-209ENST00000583441 SP8Q8IXZ3 490 aa6.75□□□□□ -1.33
SMCHD1-209ENST00000583441 PANK1Q8TE04 598 aa6.75□□□□□ -1.33
SMCHD1-209ENST00000583441 ADAM7Q9H2U9 754 aa6.75□□□□□ -1.33
SMCHD1-209ENST00000583441 PICK1Q9NRD5 415 aa6.75□□□□□ -1.33
SMCHD1-209ENST00000583441 ZSWIM5Q9P217 1185 aa6.75□□□□□ -1.33
SMCHD1-209ENST00000583441 TPX2Q9ULW0 747 aaKnown RBP6.75□□□□□ -1.33
SMCHD1-209ENST00000583441 ST14Q9Y5Y6 855 aa6.75□□□□□ -1.33
SMCHD1-209ENST00000583441 ZC3H12DA2A288 527 aaKnown RBP6.74□□□□□ -1.33
SMCHD1-209ENST00000583441 FGD1P98174 961 aa6.74□□□□□ -1.33
SMCHD1-209ENST00000583441 CLP1Q92989 425 aaKnown RBP6.74□□□□□ -1.33
SMCHD1-209ENST00000583441 ADAMTS10Q9H324 1103 aa6.74□□□□□ -1.33
SMCHD1-209ENST00000583441 ZNF552Q9H707 407 aaPredicted RBP6.74□□□□□ -1.33
SMCHD1-209ENST00000583441 IRAK3Q9Y616 596 aa6.74□□□□□ -1.33
SMCHD1-209ENST00000583441 PDE6BP35913 854 aa6.73□□□□□ -1.33
SMCHD1-209ENST00000583441 HHIPL2Q6UWX4 724 aa6.73□□□□□ -1.33
SMCHD1-209ENST00000583441 C22orf34Q6ZV56 151 aa6.73□□□□□ -1.33
SMCHD1-209ENST00000583441 CDC37L1Q7L3B6 337 aa6.73□□□□□ -1.33
SMCHD1-209ENST00000583441 C19orf44Q9H6X5 657 aa6.73□□□□□ -1.33
SMCHD1-209ENST00000583441 SLC22A31A6NKX4 558 aa6.72□□□□□ -1.33
SMCHD1-209ENST00000583441 PPM1JQ5JR12 505 aa6.72□□□□□ -1.33
SMCHD1-209ENST00000583441 LILRA2Q8N149 483 aa6.72□□□□□ -1.33
SMCHD1-209ENST00000583441 SLC16A11Q8NCK7 471 aa6.72□□□□□ -1.33
SMCHD1-209ENST00000583441 DACT3Q96B18 629 aaPredicted RBP6.72□□□□□ -1.33
SMCHD1-209ENST00000583441 INTS4Q96HW7 963 aaKnown RBP6.72□□□□□ -1.33
SMCHD1-209ENST00000583441 SIGLEC10Q96LC7 697 aa6.72□□□□□ -1.33
SMCHD1-209ENST00000583441 GRIN3BO60391 1043 aa6.71□□□□□ -1.34
SMCHD1-209ENST00000583441 VMACQ2NL98 169 aa6.71□□□□□ -1.34
SMCHD1-209ENST00000583441 B4GALNT3Q6L9W6 998 aa6.71□□□□□ -1.34
SMCHD1-209ENST00000583441 SYT8Q8NBV8 401 aa6.71□□□□□ -1.34
SMCHD1-209ENST00000583441 CWC22Q9HCG8 908 aaKnown RBP6.71□□□□□ -1.34
SMCHD1-209ENST00000583441 CAPN6Q9Y6Q1 641 aa6.71□□□□□ -1.34
SMCHD1-209ENST00000583441 FSHBP01225 129 aa6.7□□□□□ -1.34
SMCHD1-209ENST00000583441 HMGA2P52926 109 aa6.7□□□□□ -1.34
SMCHD1-209ENST00000583441 FAAP100Q0VG06 881 aa6.7□□□□□ -1.34
SMCHD1-209ENST00000583441 FRMD5Q7Z6J6 570 aa6.7□□□□□ -1.34
SMCHD1-209ENST00000583441 UBE3DQ7Z6J8 389 aa6.7□□□□□ -1.34
SMCHD1-209ENST00000583441 CSADQ9Y600 493 aa6.7□□□□□ -1.34
SMCHD1-209ENST00000583441 BRD1O95696 1058 aa6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 ATP2B4P23634 1241 aa6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 PPP2R3AQ06190 1150 aa6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 TMEM164Q5U3C3 297 aa6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 ARMCX6Q7L4S7 300 aa6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 TMPRSS7Q7RTY8 843 aa6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 PDZD3Q86UT5 571 aa6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 OXR1Q8N573 874 aa6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 PDZD8Q8NEN9 1154 aa6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 YBX2Q9Y2T7 364 aaKnown RBP6.69□□□□□ -1.34
SMCHD1-209ENST00000583441 LRIG2O94898 1065 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 SLITRK5O94991 958 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 CBX7O95931 251 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 ESR1P03372 595 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 TNFRSF1AP19438 455 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 TRIM26Q12899 539 aaPredicted RBP6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 KCT2Q8NC54 265 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 ACSBG1Q96GR2 724 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 SORCS2Q96PQ0 1159 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 MENTQ9BUN1 341 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 SP110Q9HB58 689 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 LUC7LQ9NQ29 371 aaKnown RBP6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 PODXL2Q9NZ53 605 aa6.68□□□□□ -1.34
SMCHD1-209ENST00000583441 KCNA1Q09470 495 aa6.67□□□□□ -1.34
SMCHD1-209ENST00000583441 ZNF827Q17R98 1081 aa6.67□□□□□ -1.34
SMCHD1-209ENST00000583441 MAP1SQ66K74 1059 aaPredicted RBP6.67□□□□□ -1.34
SMCHD1-209ENST00000583441 CREG2Q8IUH2 290 aa6.67□□□□□ -1.34
SMCHD1-209ENST00000583441 ABCB6Q9NP58 842 aa6.67□□□□□ -1.34
SMCHD1-209ENST00000583441 GPN3Q9UHW5 284 aaPredicted RBP6.67□□□□□ -1.34
SMCHD1-209ENST00000583441 TMEM238LA0A1B0GVL6 79 aa6.66□□□□□ -1.34
SMCHD1-209ENST00000583441 K7ESM1 405 aa6.66□□□□□ -1.34
SMCHD1-209ENST00000583441 FANCGO15287 622 aa6.66□□□□□ -1.34
SMCHD1-209ENST00000583441 NTF4P34130 210 aa6.66□□□□□ -1.34
SMCHD1-209ENST00000583441 RTP5Q14D33 572 aa6.66□□□□□ -1.34
SMCHD1-209ENST00000583441 AEBP1Q8IUX7 1158 aa6.66□□□□□ -1.34
SMCHD1-209ENST00000583441 GJD3Q8N144 294 aa6.66□□□□□ -1.34
SMCHD1-209ENST00000583441 GPBAR1Q8TDU6 330 aa6.66□□□□□ -1.34
SMCHD1-209ENST00000583441 TMEM39AQ9NV64 488 aa6.66□□□□□ -1.34
SMCHD1-209ENST00000583441 FITM1A5D6W6 292 aa6.65□□□□□ -1.34
SMCHD1-209ENST00000583441 TMEM88BA6NKF7 163 aa6.65□□□□□ -1.34
SMCHD1-209ENST00000583441 USPL1Q5W0Q7 1092 aa6.65□□□□□ -1.34
SMCHD1-209ENST00000583441 GTF3C2Q8WUA4 911 aaPredicted RBP6.65□□□□□ -1.34
SMCHD1-209ENST00000583441 SLAIN2Q9P270 581 aa6.65□□□□□ -1.34
SMCHD1-209ENST00000583441 CILPO75339 1184 aa6.64□□□□□ -1.35
SMCHD1-209ENST00000583441 TIGD5Q53EQ6 642 aa6.64□□□□□ -1.35
SMCHD1-209ENST00000583441 SULF2Q8IWU5 870 aa6.64□□□□□ -1.35
SMCHD1-209ENST00000583441 MIPEPQ99797 713 aa6.64□□□□□ -1.35
SMCHD1-209ENST00000583441 SIRT5Q9NXA8 310 aa6.64□□□□□ -1.35
SMCHD1-209ENST00000583441 CNOT11Q9UKZ1 510 aaKnown RBP6.64□□□□□ -1.35
SMCHD1-209ENST00000583441 DCDC2CA8MYV0 355 aa6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 FZD6O60353 706 aa6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 NEFLP07196 543 aa6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 ARNTP27540 789 aa6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 SRSF3P84103 164 aaKnown RBP6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 ZBTB37Q5TC79 503 aa6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 ZNF746Q6NUN9 644 aaPredicted RBP6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 PRPF40BQ6NWY9 871 aaKnown RBP6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 C12orf40Q86WS4 652 aa6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 NPHS2Q9NP85 383 aa6.63□□□□□ -1.35
SMCHD1-209ENST00000583441 MATN3O15232 486 aa6.62□□□□□ -1.35
SMCHD1-209ENST00000583441 FAM13AO94988 1023 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms