RNA–Protein interactions for RNA: ENST00000583328.5

TOP3A-215, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-215ENST00000583328 TRIM34Q9BYJ4 488 aa15.17■□□□□ 0.02
TOP3A-215ENST00000583328 RBPJLQ9UBG7 517 aa15.17■□□□□ 0.02
TOP3A-215ENST00000583328 PTPRFP10586 1907 aa15.17■□□□□ 0.02
TOP3A-215ENST00000583328 PHIPQ8WWQ0 1821 aa15.17■□□□□ 0.02
TOP3A-215ENST00000583328 USP17L10C9JJH3 530 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 POTEB2H3BUK9 544 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 ERVK-9P63128 1117 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 ERVK-24P63145 666 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 CCL14Q16627 93 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 FAM109BQ6ICB4 259 aaPredicted RBP15.16■□□□□ 0.02
TOP3A-215ENST00000583328 PI16Q6UXB8 463 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 GPR142Q7Z601 462 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 PLEKHH3Q7Z736 793 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 SH3RF3Q8TEJ3 882 aaPredicted RBP15.16■□□□□ 0.02
TOP3A-215ENST00000583328 GTF3C2Q8WUA4 911 aaPredicted RBP15.16■□□□□ 0.02
TOP3A-215ENST00000583328 USP6NLQ92738 828 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 FAM161BQ96MY7 647 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 DHX36Q9H2U1 1008 aaKnown RBP15.16■□□□□ 0.02
TOP3A-215ENST00000583328 LRP2BPQ9P2M1 347 aa15.16■□□□□ 0.02
TOP3A-215ENST00000583328 NOB1Q9ULX3 412 aaKnown RBP15.16■□□□□ 0.02
TOP3A-215ENST00000583328 COL2A1P02458 1487 aaPredicted RBP15.15■□□□□ 0.02
TOP3A-215ENST00000583328 MORN1Q5T089 497 aa15.15■□□□□ 0.02
TOP3A-215ENST00000583328 FOXP4Q8IVH2 680 aaPredicted RBP15.15■□□□□ 0.02
TOP3A-215ENST00000583328 CRACR2BQ8N4Y2 399 aaPredicted RBP15.15■□□□□ 0.02
TOP3A-215ENST00000583328 GUCD1Q96NT3 240 aa15.15■□□□□ 0.02
TOP3A-215ENST00000583328 APBA2Q99767 749 aa15.15■□□□□ 0.02
TOP3A-215ENST00000583328 API5Q9BZZ5 524 aaKnown RBP15.15■□□□□ 0.02
TOP3A-215ENST00000583328 SENP6Q9GZR1 1112 aaPredicted RBP15.15■□□□□ 0.02
TOP3A-215ENST00000583328 PORCNQ9H237 461 aa15.15■□□□□ 0.02
TOP3A-215ENST00000583328 SRGAP3O43295 1099 aa15.14■□□□□ 0.01
TOP3A-215ENST00000583328 GDF11O95390 407 aa15.14■□□□□ 0.01
TOP3A-215ENST00000583328 BAG3O95817 575 aa15.14■□□□□ 0.01
TOP3A-215ENST00000583328 JAG1P78504 1218 aa15.14■□□□□ 0.01
TOP3A-215ENST00000583328 SLFN5Q08AF3 891 aa15.14■□□□□ 0.01
TOP3A-215ENST00000583328 MFSD14CQ5VZR4 134 aa15.14■□□□□ 0.01
TOP3A-215ENST00000583328 TGFBRAP1Q8WUH2 860 aa15.14■□□□□ 0.01
TOP3A-215ENST00000583328 EDC3Q96F86 508 aaKnown RBP15.14■□□□□ 0.01
TOP3A-215ENST00000583328 MEIS3Q99687 375 aa15.14■□□□□ 0.01
TOP3A-215ENST00000583328 GINM1Q9NU53 330 aa15.14■□□□□ 0.01
TOP3A-215ENST00000583328 DDX60LQ5H9U9 1706 aaKnown RBP15.14■□□□□ 0.01
TOP3A-215ENST00000583328 GLRX3O76003 335 aaKnown RBP15.13■□□□□ 0.01
TOP3A-215ENST00000583328 PLCG2P16885 1265 aa15.13■□□□□ 0.01
TOP3A-215ENST00000583328 MAP2K5Q13163 448 aa15.13■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L2Q6R6M4 530 aa15.13■□□□□ 0.01
TOP3A-215ENST00000583328 MAPKAPK5Q8IW41 473 aa15.13■□□□□ 0.01
TOP3A-215ENST00000583328 AATFQ9NY61 560 aaKnown RBP eCLIP15.13■□□□□ 0.01
TOP3A-215ENST00000583328 PRKAG2Q9UGJ0 569 aa15.13■□□□□ 0.01
TOP3A-215ENST00000583328 UQCRFS1P1P0C7P4 283 aa15.12■□□□□ 0.01
TOP3A-215ENST00000583328 ARID4AP29374 1257 aaPredicted RBP15.12■□□□□ 0.01
TOP3A-215ENST00000583328 ATN1P54259 1190 aaPredicted RBP15.12■□□□□ 0.01
TOP3A-215ENST00000583328 SHROOM1Q2M3G4 852 aaPredicted RBP15.12■□□□□ 0.01
TOP3A-215ENST00000583328 ZNF697Q5TEC3 545 aa15.12■□□□□ 0.01
TOP3A-215ENST00000583328 WDR78Q5VTH9 848 aa15.12■□□□□ 0.01
TOP3A-215ENST00000583328 NAA16Q6N069 864 aaPredicted RBP15.12■□□□□ 0.01
TOP3A-215ENST00000583328 EMILIN3Q9NT22 766 aa15.12■□□□□ 0.01
TOP3A-215ENST00000583328 ZBTB21Q9ULJ3 1066 aa15.12■□□□□ 0.01
TOP3A-215ENST00000583328 NDUFB9Q9Y6M9 179 aa15.12■□□□□ 0.01
TOP3A-215ENST00000583328 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.12■□□□□ 0.01
TOP3A-215ENST00000583328 LOC285556D6RIA3 1793 aa15.11■□□□□ 0.01
TOP3A-215ENST00000583328 GNAI3P08754 354 aa15.11■□□□□ 0.01
TOP3A-215ENST00000583328 CNGA1P29973 690 aa15.11■□□□□ 0.01
TOP3A-215ENST00000583328 MCAMP43121 646 aa15.11■□□□□ 0.01
TOP3A-215ENST00000583328 CCNA1P78396 465 aa15.11■□□□□ 0.01
TOP3A-215ENST00000583328 ATP2B2Q01814 1243 aa15.11■□□□□ 0.01
TOP3A-215ENST00000583328 DNAJC18Q9H819 358 aa15.11■□□□□ 0.01
TOP3A-215ENST00000583328 DDX20Q9UHI6 824 aaKnown RBP15.11■□□□□ 0.01
TOP3A-215ENST00000583328 PALD1Q9ULE6 856 aa15.11■□□□□ 0.01
TOP3A-215ENST00000583328 RABGAP1Q9Y3P9 1069 aa15.11■□□□□ 0.01
TOP3A-215ENST00000583328 MSCO60682 206 aa15.1■□□□□ 0.01
TOP3A-215ENST00000583328 HLA-DOAP06340 250 aa15.1■□□□□ 0.01
TOP3A-215ENST00000583328 PPP4CP60510 307 aa15.1■□□□□ 0.01
TOP3A-215ENST00000583328 G3BP1Q13283 466 aaKnown RBP eCLIP15.1■□□□□ 0.01
TOP3A-215ENST00000583328 POTEEQ6S8J3 1075 aa15.1■□□□□ 0.01
TOP3A-215ENST00000583328 METTL16Q86W50 562 aaKnown RBP15.1■□□□□ 0.01
TOP3A-215ENST00000583328 CDCA7LQ96GN5 454 aa15.1■□□□□ 0.01
TOP3A-215ENST00000583328 SNRKQ9NRH2 765 aa15.1■□□□□ 0.01
TOP3A-215ENST00000583328 FLRT1Q9NZU1 646 aa15.1■□□□□ 0.01
TOP3A-215ENST00000583328 SAP30BPQ9UHR5 308 aaKnown RBP15.1■□□□□ 0.01
TOP3A-215ENST00000583328 FLT1P17948 1338 aa15.1■□□□□ 0.01
TOP3A-215ENST00000583328 PLXNB2O15031 1838 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 SLC15A5A6NIM6 579 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L15C9J2P7 530 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L13C9JLJ4 530 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L11C9JVI0 530 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L18D6R9N7 530 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L22D6RA61 530 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L17D6RBQ6 530 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L19D6RCP7 530 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L20D6RJB6 530 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 GH2P01242 217 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 PTPREP23469 700 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 RTP1P59025 263 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 USP17L24Q0WX57 530 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 MTX1Q13505 466 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 ZYXQ15942 572 aaKnown RBP15.09■□□□□ 0.01
TOP3A-215ENST00000583328 ATF7IPQ6VMQ6 1270 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 LPAR1Q92633 364 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 CDX2Q99626 313 aaPredicted RBP15.09■□□□□ 0.01
TOP3A-215ENST00000583328 FEZ1Q99689 392 aa15.09■□□□□ 0.01
TOP3A-215ENST00000583328 IVNS1ABPQ9Y6Y0 642 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms