RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 RGMBQ6NW40 437 aa12.84□□□□□ -0.35
SS18-221ENST00000582448 KRT26Q7Z3Y9 468 aa12.84□□□□□ -0.35
SS18-221ENST00000582448 FTSJ3Q8IY81 847 aaKnown RBP12.84□□□□□ -0.35
SS18-221ENST00000582448 DEPDC4Q8N2C3 294 aa12.84□□□□□ -0.35
SS18-221ENST00000582448 C2orf69Q8N8R5 385 aa12.84□□□□□ -0.35
SS18-221ENST00000582448 ZSCAN10Q96SZ4 725 aaPredicted RBP12.84□□□□□ -0.35
SS18-221ENST00000582448 BABAM1Q9NWV8 329 aa12.84□□□□□ -0.35
SS18-221ENST00000582448 PCDHGA11Q9Y5H2 935 aa12.84□□□□□ -0.35
SS18-221ENST00000582448 ADM5C9JUS6 153 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 TRPA1O75762 1119 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 GDF10P55107 478 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 SOX10P56693 466 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 KIF23Q02241 960 aaPredicted RBP12.83□□□□□ -0.36
SS18-221ENST00000582448 TCIRG1Q13488 830 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 EML3Q32P44 896 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 TWISTNBQ3B726 338 aaPredicted RBP12.83□□□□□ -0.36
SS18-221ENST00000582448 TBC1D9Q6ZT07 1266 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 SV2AQ7L0J3 742 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 TAS1R3Q7RTX0 852 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 LRP10Q7Z4F1 713 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 DCPSQ96C86 337 aaKnown RBP12.83□□□□□ -0.36
SS18-221ENST00000582448 CHMP4AQ9BY43 222 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 GBA2Q9HCG7 927 aaPredicted RBP12.83□□□□□ -0.36
SS18-221ENST00000582448 SH3TC1Q8TE82 1336 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 CDHR2Q9BYE9 1310 aa12.83□□□□□ -0.36
SS18-221ENST00000582448 LAMB4A4D0S4 1761 aa12.82□□□□□ -0.36
SS18-221ENST00000582448 THSD7BQ9C0I4 1608 aa12.82□□□□□ -0.36
SS18-221ENST00000582448 A6NJR5 290 aa12.82□□□□□ -0.36
SS18-221ENST00000582448 USP17L5A8MUK1 530 aa12.82□□□□□ -0.36
SS18-221ENST00000582448 EGFRP00533 1210 aa12.82□□□□□ -0.36
SS18-221ENST00000582448 INHAP05111 366 aa12.82□□□□□ -0.36
SS18-221ENST00000582448 RNFT1Q5M7Z0 435 aa12.82□□□□□ -0.36
SS18-221ENST00000582448 KCNQ5Q9NR82 932 aa12.82□□□□□ -0.36
SS18-221ENST00000582448 DYRK1BQ9Y463 629 aa12.82□□□□□ -0.36
SS18-221ENST00000582448 TMEM229AB2RXF0 380 aa12.81□□□□□ -0.36
SS18-221ENST00000582448 PHKA2P46019 1235 aa12.81□□□□□ -0.36
SS18-221ENST00000582448 C20orf194Q5TEA3 1177 aa12.81□□□□□ -0.36
SS18-221ENST00000582448 SSH1Q8WYL5 1049 aa12.81□□□□□ -0.36
SS18-221ENST00000582448 DPF2Q92785 391 aa12.81□□□□□ -0.36
SS18-221ENST00000582448 CELF1Q92879 486 aaKnown RBP12.81□□□□□ -0.36
SS18-221ENST00000582448 FAM89AQ96GI7 184 aa12.81□□□□□ -0.36
SS18-221ENST00000582448 GAS2L1Q99501 681 aaPredicted RBP12.81□□□□□ -0.36
SS18-221ENST00000582448 COL25A1Q9BXS0 654 aaPredicted RBP12.81□□□□□ -0.36
SS18-221ENST00000582448 CHMP4BQ9H444 224 aaKnown RBP12.81□□□□□ -0.36
SS18-221ENST00000582448 RNF186Q9NXI6 227 aa12.81□□□□□ -0.36
SS18-221ENST00000582448 FAM155AB1AL88 458 aaPredicted RBP12.8□□□□□ -0.36
SS18-221ENST00000582448 ECE2O60344 883 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 VAMP4O75379 141 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 GPSM2P81274 684 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 TLR1Q15399 786 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 KRT24Q2M2I5 525 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 WDR44Q5JSH3 913 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 TMC4Q7Z404 712 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 DZIP1LQ8IYY4 767 aaKnown RBP12.8□□□□□ -0.36
SS18-221ENST00000582448 CNTNAP3BQ96NU0 1288 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 CNTNAP3Q9BZ76 1288 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 TIMMDC1Q9NPL8 285 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 POLLQ9UGP5 575 aa12.8□□□□□ -0.36
SS18-221ENST00000582448 ELL2O00472 640 aaPredicted RBP12.79□□□□□ -0.36
SS18-221ENST00000582448 DBN1Q16643 649 aa12.79□□□□□ -0.36
SS18-221ENST00000582448 KIF4BQ2VIQ3 1234 aa12.79□□□□□ -0.36
SS18-221ENST00000582448 C4orf17Q53FE4 359 aa12.79□□□□□ -0.36
SS18-221ENST00000582448 ATF7IPQ6VMQ6 1270 aa12.79□□□□□ -0.36
SS18-221ENST00000582448 ZSCAN1Q8NBB4 408 aa12.79□□□□□ -0.36
SS18-221ENST00000582448 GLMNQ92990 594 aa12.79□□□□□ -0.36
SS18-221ENST00000582448 EYA3Q99504 573 aa12.79□□□□□ -0.36
SS18-221ENST00000582448 NOD1Q9Y239 953 aa12.79□□□□□ -0.36
SS18-221ENST00000582448 KDM3BQ7LBC6 1761 aa12.79□□□□□ -0.36
SS18-221ENST00000582448 LZTS3O60299 673 aaPredicted RBP12.78□□□□□ -0.36
SS18-221ENST00000582448 GTF2IP78347 998 aa12.78□□□□□ -0.36
SS18-221ENST00000582448 TMEM214Q6NUQ4 689 aaKnown RBP12.78□□□□□ -0.36
SS18-221ENST00000582448 RIPOR1Q6ZS17 1223 aa12.78□□□□□ -0.36
SS18-221ENST00000582448 C8orf58Q8NAV2 365 aa12.78□□□□□ -0.36
SS18-221ENST00000582448 ARHGAP45Q92619 1136 aa12.78□□□□□ -0.36
SS18-221ENST00000582448 ZNF837Q96EG3 531 aaPredicted RBP12.78□□□□□ -0.36
SS18-221ENST00000582448 CSRNP1Q96S65 589 aa12.78□□□□□ -0.36
SS18-221ENST00000582448 ZC3H12CQ9C0D7 883 aaKnown RBP12.78□□□□□ -0.36
SS18-221ENST00000582448 GGA3Q9NZ52 723 aa12.78□□□□□ -0.36
SS18-221ENST00000582448 SERTAD1Q9UHV2 236 aa12.78□□□□□ -0.36
SS18-221ENST00000582448 NOB1Q9ULX3 412 aaKnown RBP12.78□□□□□ -0.36
SS18-221ENST00000582448 ASTN2O75129 1339 aaPredicted RBP12.78□□□□□ -0.36
SS18-221ENST00000582448 DLG5Q8TDM6 1919 aa12.78□□□□□ -0.36
SS18-221ENST00000582448 RPS12P25398 132 aaKnown RBP12.77□□□□□ -0.37
SS18-221ENST00000582448 TRIM22Q8IYM9 498 aa12.77□□□□□ -0.37
SS18-221ENST00000582448 PANK1Q8TE04 598 aa12.77□□□□□ -0.37
SS18-221ENST00000582448 API5Q9BZZ5 524 aaKnown RBP12.77□□□□□ -0.37
SS18-221ENST00000582448 SAGE1Q9NXZ1 904 aa12.77□□□□□ -0.37
SS18-221ENST00000582448 CHPF2Q9P2E5 772 aa12.77□□□□□ -0.37
SS18-221ENST00000582448 STK17AQ9UEE5 414 aa12.77□□□□□ -0.37
SS18-221ENST00000582448 ATP9BO43861 1147 aa12.76□□□□□ -0.37
SS18-221ENST00000582448 RPS8P62241 208 aaKnown RBP12.76□□□□□ -0.37
SS18-221ENST00000582448 SF3B3Q15393 1217 aaKnown RBP12.76□□□□□ -0.37
SS18-221ENST00000582448 PLBD2Q8NHP8 589 aa12.76□□□□□ -0.37
SS18-221ENST00000582448 TBC1D16Q8TBP0 767 aa12.76□□□□□ -0.37
SS18-221ENST00000582448 CDCA5Q96FF9 252 aa12.76□□□□□ -0.37
SS18-221ENST00000582448 STK31Q9BXU1 1019 aa12.76□□□□□ -0.37
SS18-221ENST00000582448 ANKIB1Q9P2G1 1089 aa12.76□□□□□ -0.37
SS18-221ENST00000582448 DDX19BQ9UMR2 479 aa12.76□□□□□ -0.37
SS18-221ENST00000582448 SCAF8Q9UPN6 1271 aaKnown RBP12.76□□□□□ -0.37
SS18-221ENST00000582448 TAF1P21675 1872 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms