RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 LZTFL1Q9NQ48 299 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 SRPRBQ9Y5M8 271 aaKnown RBP13.92□□□□□ -0.18
SHMT1-208ENST00000582352 TIAM2Q8IVF5 1701 aa13.92□□□□□ -0.18
SHMT1-208ENST00000582352 MYH3P11055 1940 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 CCDC196A0A1B0GTZ2 297 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 PATL2C9JE40 543 aaKnown RBP13.91□□□□□ -0.18
SHMT1-208ENST00000582352 HNRNPH2P55795 449 aaKnown RBP13.91□□□□□ -0.18
SHMT1-208ENST00000582352 CHMP4BP1P59074 171 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 NR5A1Q13285 461 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 MTF1Q14872 753 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 WTAPQ15007 396 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 NKX1-1Q15270 411 aaPredicted RBP13.91□□□□□ -0.18
SHMT1-208ENST00000582352 CCDC82Q8N4S0 544 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 TEX13AQ9BXU3 409 aaPredicted RBP13.91□□□□□ -0.18
SHMT1-208ENST00000582352 CCDC151A5D8V7 595 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 KIF5CO60282 957 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 MAGEB6Q8N7X4 407 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 PRDM11Q9NQV5 511 aa13.91□□□□□ -0.18
SHMT1-208ENST00000582352 TDO2P48775 406 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 MAP3K12Q12852 859 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 KLHL10Q6JEL2 608 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 IGSF22Q8N9C0 903 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 CSRNP2Q9H175 543 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 ZSWIM4Q9H7M6 989 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 TMOD3Q9NYL9 352 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 SPATA31A3Q5VYP0 1347 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 IRX5P78411 483 aaPredicted RBP13.9□□□□□ -0.18
SHMT1-208ENST00000582352 BRD3Q15059 726 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 PUM3Q15397 648 aaKnown RBP13.9□□□□□ -0.18
SHMT1-208ENST00000582352 LONRF2Q1L5Z9 754 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 GIGYF2Q6Y7W6 1299 aaKnown RBP13.9□□□□□ -0.18
SHMT1-208ENST00000582352 MED15Q96RN5 788 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 ZKSCAN3Q9BRR0 538 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 FUT8Q9BYC5 575 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 NACAP1Q9BZK3 213 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 ARMT1Q9H993 441 aa13.9□□□□□ -0.18
SHMT1-208ENST00000582352 IL2RBP14784 551 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 ST5P78524 1137 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 SPATA1Q5VX52 437 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 SRGAP1Q7Z6B7 1085 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 NLRP10Q86W26 655 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 SPATA20Q8TB22 786 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 CTAGE1Q96RT6 745 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 IRX2Q9BZI1 471 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-208ENST00000582352 ZCCHC17Q9NP64 241 aaKnown RBP13.89□□□□□ -0.19
SHMT1-208ENST00000582352 ADGRG1Q9Y653 693 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 DCCP43146 1447 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 IRS4O14654 1257 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-208ENST00000582352 ZBTB22O15209 634 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 RBL2Q08999 1139 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 FILIP1LQ4L180 1135 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 CT47A1Q5JQC4 288 aaPredicted RBP13.89□□□□□ -0.19
SHMT1-208ENST00000582352 USP49Q70CQ1 688 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 DNAJC10Q8IXB1 793 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 CMTR1Q8N1G2 835 aaKnown RBP13.89□□□□□ -0.19
SHMT1-208ENST00000582352 CEP112Q8N8E3 955 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 SPATA5Q8NB90 893 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 NUP133Q8WUM0 1156 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 LPIN2Q92539 896 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 CABP5Q9NP86 173 aa13.89□□□□□ -0.19
SHMT1-208ENST00000582352 TEX33O43247 280 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 STARD3NLO95772 234 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 RAD9BQ6WBX8 426 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 CRACR2BQ8N4Y2 399 aaPredicted RBP13.88□□□□□ -0.19
SHMT1-208ENST00000582352 CPLX3Q8WVH0 158 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 STAG1Q8WVM7 1258 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 AK7Q96M32 723 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 SEC31BQ9NQW1 1179 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 STRN4Q9NRL3 753 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 TRIM75PA6NK02 468 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 POTEB2H3BUK9 544 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 AFMP43652 599 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 OXER1Q8TDS5 423 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 PUF60Q9UHX1 559 aaKnown RBP13.88□□□□□ -0.19
SHMT1-208ENST00000582352 MYH6P13533 1939 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 MFAP3LO75121 409 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 XBP1P17861 261 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 STX17P56962 302 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 AKAP17AQ02040 695 aaKnown RBP13.88□□□□□ -0.19
SHMT1-208ENST00000582352 CNGA4Q8IV77 575 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 TMTC2Q8N394 836 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 UBAC1Q9BSL1 405 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 AATFQ9NY61 560 aaKnown RBP eCLIP13.88□□□□□ -0.19
SHMT1-208ENST00000582352 TRMT112Q9UI30 125 aaKnown RBP13.88□□□□□ -0.19
SHMT1-208ENST00000582352 CDC23Q9UJX2 597 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 TACC3Q9Y6A5 838 aa13.88□□□□□ -0.19
SHMT1-208ENST00000582352 ARAP2Q8WZ64 1704 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 SHANK3Q9BYB0 1731 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 GSG1L2A8MUP6 293 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 GNAT2P19087 354 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 RCAN1P53805 252 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 HLFQ16534 295 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 APTXQ7Z2E3 356 aaKnown RBP13.87□□□□□ -0.19
SHMT1-208ENST00000582352 ZNF654Q8IZM8 581 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 FANCBQ8NB91 859 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 DOCK2Q92608 1830 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 CTAGE9A4FU28 777 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 ERLIN1O75477 346 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 SLC5A1P13866 664 aa13.87□□□□□ -0.19
SHMT1-208ENST00000582352 TUBB2AQ13885 445 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms