RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 ERVK-9P63128 1117 aa15.75■□□□□ 0.11
SS18-219ENST00000581570 ERVK-24P63145 666 aa15.75■□□□□ 0.11
SS18-219ENST00000581570 MORN1Q5T089 497 aa15.75■□□□□ 0.11
SS18-219ENST00000581570 GPR142Q7Z601 462 aa15.75■□□□□ 0.11
SS18-219ENST00000581570 TEX11Q8IYF3 940 aa15.75■□□□□ 0.11
SS18-219ENST00000581570 SENP6Q9GZR1 1112 aaPredicted RBP15.75■□□□□ 0.11
SS18-219ENST00000581570 PI4KBQ9UBF8 816 aa15.75■□□□□ 0.11
SS18-219ENST00000581570 HDAC5Q9UQL6 1122 aa15.75■□□□□ 0.11
SS18-219ENST00000581570 AKAP2Q9Y2D5 859 aa15.75■□□□□ 0.11
SS18-219ENST00000581570 COL2A1P02458 1487 aaPredicted RBP15.75■□□□□ 0.11
SS18-219ENST00000581570 CUL9Q8IWT3 2517 aa15.75■□□□□ 0.11
SS18-219ENST00000581570 ZNF697Q5TEC3 545 aa15.74■□□□□ 0.11
SS18-219ENST00000581570 TBC1D9Q6ZT07 1266 aa15.74■□□□□ 0.11
SS18-219ENST00000581570 PLEKHH3Q7Z736 793 aa15.74■□□□□ 0.11
SS18-219ENST00000581570 APBA2Q99767 749 aa15.74■□□□□ 0.11
SS18-219ENST00000581570 PORCNQ9H237 461 aa15.74■□□□□ 0.11
SS18-219ENST00000581570 CWC22Q9HCG8 908 aaKnown RBP15.74■□□□□ 0.11
SS18-219ENST00000581570 RAI14Q9P0K7 980 aa15.74■□□□□ 0.11
SS18-219ENST00000581570 HMG20BQ9P0W2 317 aa15.74■□□□□ 0.11
SS18-219ENST00000581570 LOC285556D6RIA3 1793 aa15.74■□□□□ 0.11
SS18-219ENST00000581570 ZNF521Q96K83 1311 aa15.73■□□□□ 0.11
SS18-219ENST00000581570 USP17L10C9JJH3 530 aa15.73■□□□□ 0.11
SS18-219ENST00000581570 ANP32CO43423 234 aa15.73■□□□□ 0.11
SS18-219ENST00000581570 JAG1P78504 1218 aa15.73■□□□□ 0.11
SS18-219ENST00000581570 TFCP2Q12800 502 aa15.73■□□□□ 0.11
SS18-219ENST00000581570 GTF3C2Q8WUA4 911 aaPredicted RBP15.73■□□□□ 0.11
SS18-219ENST00000581570 NEUROD6Q96NK8 337 aa15.73■□□□□ 0.11
SS18-219ENST00000581570 PAGR1Q9BTK6 254 aa15.73■□□□□ 0.11
SS18-219ENST00000581570 DHX36Q9H2U1 1008 aaKnown RBP15.73■□□□□ 0.11
SS18-219ENST00000581570 PLXNB2O15031 1838 aa15.73■□□□□ 0.11
SS18-219ENST00000581570 UNC80Q8N2C7 3258 aa15.72■□□□□ 0.11
SS18-219ENST00000581570 ALDH1L2Q3SY69 923 aa15.72■□□□□ 0.11
SS18-219ENST00000581570 GORABQ5T7V8 394 aa15.72■□□□□ 0.11
SS18-219ENST00000581570 MFSD14CQ5VZR4 134 aa15.72■□□□□ 0.11
SS18-219ENST00000581570 PI16Q6UXB8 463 aa15.72■□□□□ 0.11
SS18-219ENST00000581570 SPATA5Q8NB90 893 aa15.72■□□□□ 0.11
SS18-219ENST00000581570 SH3RF3Q8TEJ3 882 aaPredicted RBP15.72■□□□□ 0.11
SS18-219ENST00000581570 EDC3Q96F86 508 aaKnown RBP15.72■□□□□ 0.11
SS18-219ENST00000581570 NOL10Q9BSC4 688 aaKnown RBP15.72■□□□□ 0.11
SS18-219ENST00000581570 PRKAG2Q9UGJ0 569 aa15.72■□□□□ 0.11
SS18-219ENST00000581570 E9PSI1 815 aa15.71■□□□□ 0.11
SS18-219ENST00000581570 ATN1P54259 1190 aaPredicted RBP15.71■□□□□ 0.11
SS18-219ENST00000581570 MAP2K5Q13163 448 aa15.71■□□□□ 0.11
SS18-219ENST00000581570 FOXP4Q8IVH2 680 aaPredicted RBP15.71■□□□□ 0.11
SS18-219ENST00000581570 CDX2Q99626 313 aaPredicted RBP15.71■□□□□ 0.11
SS18-219ENST00000581570 TRIM34Q9BYJ4 488 aa15.71■□□□□ 0.11
SS18-219ENST00000581570 SMC4Q9NTJ3 1288 aa15.71■□□□□ 0.11
SS18-219ENST00000581570 GINM1Q9NU53 330 aa15.71■□□□□ 0.11
SS18-219ENST00000581570 LRP2BPQ9P2M1 347 aa15.71■□□□□ 0.11
SS18-219ENST00000581570 GLRX3O76003 335 aaKnown RBP15.7■□□□□ 0.1
SS18-219ENST00000581570 GDF11O95390 407 aa15.7■□□□□ 0.1
SS18-219ENST00000581570 BAG3O95817 575 aa15.7■□□□□ 0.1
SS18-219ENST00000581570 SHROOM1Q2M3G4 852 aaPredicted RBP15.7■□□□□ 0.1
SS18-219ENST00000581570 USP17L2Q6R6M4 530 aa15.7■□□□□ 0.1
SS18-219ENST00000581570 POTEEQ6S8J3 1075 aa15.7■□□□□ 0.1
SS18-219ENST00000581570 CRACR2BQ8N4Y2 399 aaPredicted RBP15.7■□□□□ 0.1
SS18-219ENST00000581570 SEMA6BQ9H3T3 888 aa15.7■□□□□ 0.1
SS18-219ENST00000581570 DNAJC18Q9H819 358 aa15.7■□□□□ 0.1
SS18-219ENST00000581570 EMILIN3Q9NT22 766 aa15.7■□□□□ 0.1
SS18-219ENST00000581570 DDX20Q9UHI6 824 aaKnown RBP15.7■□□□□ 0.1
SS18-219ENST00000581570 MSCO60682 206 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 CNGA1P29973 690 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 RTP1P59025 263 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 CCNA1P78396 465 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 WDR78Q5VTH9 848 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 METTL16Q86W50 562 aaKnown RBP15.69■□□□□ 0.1
SS18-219ENST00000581570 MAPKAPK5Q8IW41 473 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 MAFAQ8NHW3 353 aaPredicted RBP15.69■□□□□ 0.1
SS18-219ENST00000581570 TGFBRAP1Q8WUH2 860 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 LPAR1Q92633 364 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 AATFQ9NY61 560 aaKnown RBP eCLIP15.69■□□□□ 0.1
SS18-219ENST00000581570 FLRT1Q9NZU1 646 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 ZBTB21Q9ULJ3 1066 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 RABGAP1Q9Y3P9 1069 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 NDUFB9Q9Y6M9 179 aa15.69■□□□□ 0.1
SS18-219ENST00000581570 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.69■□□□□ 0.1
SS18-219ENST00000581570 DNM1LO00429 736 aa15.68■□□□□ 0.1
SS18-219ENST00000581570 SRGAP3O43295 1099 aa15.68■□□□□ 0.1
SS18-219ENST00000581570 PLCG2P16885 1265 aa15.68■□□□□ 0.1
SS18-219ENST00000581570 PTPREP23469 700 aa15.68■□□□□ 0.1
SS18-219ENST00000581570 ARID4AP29374 1257 aaPredicted RBP15.68■□□□□ 0.1
SS18-219ENST00000581570 ATP2B2Q01814 1243 aa15.68■□□□□ 0.1
SS18-219ENST00000581570 SHHQ15465 462 aa15.68■□□□□ 0.1
SS18-219ENST00000581570 MEIS3Q99687 375 aa15.68■□□□□ 0.1
SS18-219ENST00000581570 PRDM6Q9NQX0 595 aa15.68■□□□□ 0.1
SS18-219ENST00000581570 NOB1Q9ULX3 412 aaKnown RBP15.68■□□□□ 0.1
SS18-219ENST00000581570 SLC15A5A6NIM6 579 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 USP17L15C9J2P7 530 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 USP17L13C9JLJ4 530 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 USP17L11C9JVI0 530 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 USP17L18D6R9N7 530 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 USP17L22D6RA61 530 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 USP17L17D6RBQ6 530 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 USP17L19D6RCP7 530 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 USP17L20D6RJB6 530 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 CNMDO75829 334 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 MCAMP43121 646 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 PPP4CP60510 307 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 USP17L24Q0WX57 530 aa15.67■□□□□ 0.1
SS18-219ENST00000581570 NAA16Q6N069 864 aaPredicted RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms