RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CD97P48960 835 aa10.55□□□□□ -0.72
SS18-214ENST00000580003 ARTNQ5T4W7 220 aa10.55□□□□□ -0.72
SS18-214ENST00000580003 METTL16Q86W50 562 aaKnown RBP10.55□□□□□ -0.72
SS18-214ENST00000580003 NT5DC4Q86YG4 428 aa10.55□□□□□ -0.72
SS18-214ENST00000580003 MCATQ8IVS2 390 aaKnown RBP10.55□□□□□ -0.72
SS18-214ENST00000580003 ACSF2Q96CM8 615 aaPredicted RBP10.55□□□□□ -0.72
SS18-214ENST00000580003 MIPEPQ99797 713 aa10.55□□□□□ -0.72
SS18-214ENST00000580003 BRMS1Q9HCU9 246 aa10.55□□□□□ -0.72
SS18-214ENST00000580003 HTR3BO95264 441 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 CRKP46108 304 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 MLECQ14165 292 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 SEZ6Q53EL9 994 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 TMEM201Q5SNT2 666 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 C9orf131Q5VYM1 1079 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 XAGE3Q8WTP9 111 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 NKD1Q969G9 470 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 REV1Q9UBZ9 1251 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 GTF2IRD1Q9UHL9 959 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 PRR36Q9H6K5 1346 aa10.54□□□□□ -0.72
SS18-214ENST00000580003 HYAL3O43820 417 aaPredicted RBP10.53□□□□□ -0.72
SS18-214ENST00000580003 MCM4P33991 863 aa10.53□□□□□ -0.72
SS18-214ENST00000580003 YARSP54577 528 aaKnown RBP10.53□□□□□ -0.72
SS18-214ENST00000580003 RACK1P63244 317 aaKnown RBP10.53□□□□□ -0.72
SS18-214ENST00000580003 FAM13CQ8NE31 585 aa10.53□□□□□ -0.72
SS18-214ENST00000580003 DPH2Q9BQC3 489 aaPredicted RBP10.53□□□□□ -0.72
SS18-214ENST00000580003 ZFP64Q9NPA5 681 aa10.53□□□□□ -0.72
SS18-214ENST00000580003 SLITRK5O94991 958 aa10.52□□□□□ -0.73
SS18-214ENST00000580003 MED26O95402 600 aa10.52□□□□□ -0.73
SS18-214ENST00000580003 LETMD1Q6P1Q0 360 aa10.52□□□□□ -0.73
SS18-214ENST00000580003 EAF1Q96JC9 268 aaPredicted RBP10.52□□□□□ -0.73
SS18-214ENST00000580003 PRDM5Q9NQX1 630 aaPredicted RBP10.52□□□□□ -0.73
SS18-214ENST00000580003 TPX2Q9ULW0 747 aaKnown RBP10.52□□□□□ -0.73
SS18-214ENST00000580003 PCDHB14Q9Y5E9 798 aa10.52□□□□□ -0.73
SS18-214ENST00000580003 KIAA1324LA8MWY0 1029 aaPredicted RBP10.51□□□□□ -0.73
SS18-214ENST00000580003 ZNF165P49910 485 aa10.51□□□□□ -0.73
SS18-214ENST00000580003 FAM181AQ8N9Y4 354 aa10.51□□□□□ -0.73
SS18-214ENST00000580003 ZC3H7BQ9UGR2 993 aaKnown RBP10.51□□□□□ -0.73
SS18-214ENST00000580003 KLHL3Q9UH77 587 aa10.51□□□□□ -0.73
SS18-214ENST00000580003 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.51□□□□□ -0.73
SS18-214ENST00000580003 EOMESO95936 686 aa10.5□□□□□ -0.73
SS18-214ENST00000580003 MSMPQ1L6U9 139 aa10.5□□□□□ -0.73
SS18-214ENST00000580003 ZNF746Q6NUN9 644 aaPredicted RBP10.5□□□□□ -0.73
SS18-214ENST00000580003 SLITRK4Q8IW52 837 aa10.5□□□□□ -0.73
SS18-214ENST00000580003 Q8N3U1 123 aa10.5□□□□□ -0.73
SS18-214ENST00000580003 E9PSI1 815 aa10.49□□□□□ -0.73
SS18-214ENST00000580003 IGF2BP3O00425 579 aaKnown RBP eCLIP10.49□□□□□ -0.73
SS18-214ENST00000580003 SPINK2P20155 84 aa10.49□□□□□ -0.73
SS18-214ENST00000580003 GK5Q6ZS86 529 aa10.49□□□□□ -0.73
SS18-214ENST00000580003 DTX1Q86Y01 620 aa10.49□□□□□ -0.73
SS18-214ENST00000580003 REXO1Q8N1G1 1221 aaKnown RBP10.49□□□□□ -0.73
SS18-214ENST00000580003 HEXIM2Q96MH2 286 aaKnown RBP10.49□□□□□ -0.73
SS18-214ENST00000580003 MKNK2Q9HBH9 465 aa10.49□□□□□ -0.73
SS18-214ENST00000580003 GNAT3A8MTJ3 354 aa10.48□□□□□ -0.73
SS18-214ENST00000580003 UPK3BL1B0FP48 263 aa10.48□□□□□ -0.73
SS18-214ENST00000580003 UPK3BL2E5RIL1 263 aa10.48□□□□□ -0.73
SS18-214ENST00000580003 ATE1O95260 518 aa10.48□□□□□ -0.73
SS18-214ENST00000580003 TCF3P15923 654 aa10.48□□□□□ -0.73
SS18-214ENST00000580003 FAM214BQ7L5A3 538 aa10.48□□□□□ -0.73
SS18-214ENST00000580003 NETO1Q8TDF5 533 aa10.48□□□□□ -0.73
SS18-214ENST00000580003 BSDC1Q9NW68 430 aaPredicted RBP10.48□□□□□ -0.73
SS18-214ENST00000580003 MAPK8IP1Q9UQF2 711 aa10.48□□□□□ -0.73
SS18-214ENST00000580003 CYP7A1P22680 504 aa10.47□□□□□ -0.73
SS18-214ENST00000580003 OXCT1P55809 520 aa10.47□□□□□ -0.73
SS18-214ENST00000580003 PAK2Q13177 524 aa10.47□□□□□ -0.73
SS18-214ENST00000580003 SFRP5Q5T4F7 317 aa10.47□□□□□ -0.73
SS18-214ENST00000580003 CDH24Q86UP0 819 aa10.47□□□□□ -0.73
SS18-214ENST00000580003 SLFN12Q8IYM2 578 aa10.47□□□□□ -0.73
SS18-214ENST00000580003 CYB5D2Q8WUJ1 264 aa10.47□□□□□ -0.73
SS18-214ENST00000580003 TGIF2Q9GZN2 237 aa10.47□□□□□ -0.73
SS18-214ENST00000580003 EHMT1Q9H9B1 1298 aa10.47□□□□□ -0.73
SS18-214ENST00000580003 CHURC1-FNTBB4DL54 471 aa10.46□□□□□ -0.73
SS18-214ENST00000580003 ITIH2P19823 946 aa10.46□□□□□ -0.73
SS18-214ENST00000580003 ETV3P41162 512 aa10.46□□□□□ -0.73
SS18-214ENST00000580003 CLCQ05315 142 aa10.46□□□□□ -0.73
SS18-214ENST00000580003 NBPF11Q86T75 865 aa10.46□□□□□ -0.73
SS18-214ENST00000580003 RIN3Q8TB24 985 aa10.46□□□□□ -0.73
SS18-214ENST00000580003 CCSER2Q9H7U1 834 aa10.46□□□□□ -0.73
SS18-214ENST00000580003 ANGEL1Q9UNK9 670 aaKnown RBP10.46□□□□□ -0.73
SS18-214ENST00000580003 CEACAM5P06731 702 aa10.45□□□□□ -0.74
SS18-214ENST00000580003 IFI16Q16666 785 aaKnown RBP10.45□□□□□ -0.74
SS18-214ENST00000580003 PHACTR4Q8IZ21 702 aa10.45□□□□□ -0.74
SS18-214ENST00000580003 PLD6Q8N2A8 252 aaKnown RBP10.45□□□□□ -0.74
SS18-214ENST00000580003 GMIPQ9P107 970 aa10.45□□□□□ -0.74
SS18-214ENST00000580003 ERCC5P28715 1186 aaPredicted RBP10.44□□□□□ -0.74
SS18-214ENST00000580003 TNNI2P48788 182 aa10.44□□□□□ -0.74
SS18-214ENST00000580003 CHMP4BP1P59074 171 aa10.44□□□□□ -0.74
SS18-214ENST00000580003 LRRFIP1Q32MZ4 808 aaKnown RBP10.44□□□□□ -0.74
SS18-214ENST00000580003 COX4I2Q96KJ9 171 aa10.44□□□□□ -0.74
SS18-214ENST00000580003 SPATA32Q96LK8 384 aa10.44□□□□□ -0.74
SS18-214ENST00000580003 CCDC74BQ96LY2 380 aa10.44□□□□□ -0.74
SS18-214ENST00000580003 CEP131Q9UPN4 1083 aa10.44□□□□□ -0.74
SS18-214ENST00000580003 U3KQE9 123 aa10.44□□□□□ -0.74
SS18-214ENST00000580003 TMEM265A0A087WTH1 108 aa10.43□□□□□ -0.74
SS18-214ENST00000580003 SLC22A31A6NKX4 558 aa10.43□□□□□ -0.74
SS18-214ENST00000580003 DNAJA2O60884 412 aa10.43□□□□□ -0.74
SS18-214ENST00000580003 WNT11O96014 354 aa10.43□□□□□ -0.74
SS18-214ENST00000580003 PRNPP04156 253 aa10.43□□□□□ -0.74
SS18-214ENST00000580003 ARSHQ5FYA8 562 aa10.43□□□□□ -0.74
SS18-214ENST00000580003 VSIG10LQ86VR7 867 aa10.43□□□□□ -0.74
SS18-214ENST00000580003 GPRASP2Q96D09 838 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms