RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FAM83AQ86UY5 434 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 FBXL16Q8N461 479 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 L3MBTL3Q96JM7 780 aaPredicted RBP29.54■■■□□ 2.32
SHMT1-207ENST00000580002 ZSCAN10Q96SZ4 725 aaPredicted RBP29.54■■■□□ 2.32
SHMT1-207ENST00000580002 EHD4Q9H223 541 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 ADARB2Q9NS39 739 aaKnown RBP29.54■■■□□ 2.32
SHMT1-207ENST00000580002 GGA3Q9NZ52 723 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 NAP1L2Q9ULW6 460 aaPredicted RBP29.54■■■□□ 2.32
SHMT1-207ENST00000580002 ANGEL1Q9UNK9 670 aaKnown RBP29.54■■■□□ 2.32
SHMT1-207ENST00000580002 TNKSO95271 1327 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 AKR1B1P15121 316 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 MIGA2Q7L4E1 593 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 CCDC83Q8IWF9 413 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 CRACR2BQ8N4Y2 399 aaPredicted RBP29.54■■■□□ 2.32
SHMT1-207ENST00000580002 ENAHQ8N8S7 591 aaPredicted RBP29.54■■■□□ 2.32
SHMT1-207ENST00000580002 TMEM87BQ96K49 555 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 TEPSINQ96N21 525 aa29.54■■■□□ 2.32
SHMT1-207ENST00000580002 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.54■■■□□ 2.32
SHMT1-207ENST00000580002 MYL10Q9BUA6 226 aa29.53■■■□□ 2.32
SHMT1-207ENST00000580002 KLF18A0A0U1RQI7 1052 aa29.52■■■□□ 2.32
SHMT1-207ENST00000580002 RXRAP19793 462 aa29.52■■■□□ 2.32
SHMT1-207ENST00000580002 PDIA3P30101 505 aaKnown RBP29.52■■■□□ 2.32
SHMT1-207ENST00000580002 CUL4AQ13619 759 aa29.52■■■□□ 2.32
SHMT1-207ENST00000580002 FOXP4Q8IVH2 680 aaPredicted RBP29.52■■■□□ 2.32
SHMT1-207ENST00000580002 UBAC1Q9BSL1 405 aa29.52■■■□□ 2.32
SHMT1-207ENST00000580002 DEFB129Q9H1M3 183 aa29.52■■■□□ 2.32
SHMT1-207ENST00000580002 TSPY3P0CV98 308 aa29.52■■■□□ 2.32
SHMT1-207ENST00000580002 TSPY8P0CW00 308 aa29.52■■■□□ 2.32
SHMT1-207ENST00000580002 CCT2P78371 535 aaKnown RBP29.52■■■□□ 2.32
SHMT1-207ENST00000580002 JAG1P78504 1218 aa29.52■■■□□ 2.32
SHMT1-207ENST00000580002 METTL16Q86W50 562 aaKnown RBP29.52■■■□□ 2.32
SHMT1-207ENST00000580002 SLKQ9H2G2 1235 aaPredicted RBP29.52■■■□□ 2.32
SHMT1-207ENST00000580002 WTAPQ15007 396 aa29.51■■■□□ 2.31
SHMT1-207ENST00000580002 RCSD1Q6JBY9 416 aa29.51■■■□□ 2.31
SHMT1-207ENST00000580002 CLEC10AQ8IUN9 316 aa29.51■■■□□ 2.31
SHMT1-207ENST00000580002 NCOA5Q9HCD5 579 aaKnown RBP29.51■■■□□ 2.31
SHMT1-207ENST00000580002 HPS5Q9UPZ3 1129 aa29.51■■■□□ 2.31
SHMT1-207ENST00000580002 ZC3H4Q9UPT8 1303 aaKnown RBP29.51■■■□□ 2.31
SHMT1-207ENST00000580002 EVCP57679 992 aa29.5■■■□□ 2.31
SHMT1-207ENST00000580002 IL27Q8NEV9 243 aa29.5■■■□□ 2.31
SHMT1-207ENST00000580002 ZSCAN31Q96LW9 406 aaPredicted RBP29.5■■■□□ 2.31
SHMT1-207ENST00000580002 SWAP70Q9UH65 585 aa29.5■■■□□ 2.31
SHMT1-207ENST00000580002 COL2A1P02458 1487 aaPredicted RBP29.5■■■□□ 2.31
SHMT1-207ENST00000580002 EPHX2P34913 555 aa29.49■■■□□ 2.31
SHMT1-207ENST00000580002 LIFRP42702 1097 aa29.49■■■□□ 2.31
SHMT1-207ENST00000580002 TNNI2P48788 182 aa29.49■■■□□ 2.31
SHMT1-207ENST00000580002 SCRN1Q12765 414 aa29.49■■■□□ 2.31
SHMT1-207ENST00000580002 NBPF12Q5TAG4 269 aaPredicted RBP29.49■■■□□ 2.31
SHMT1-207ENST00000580002 NFXL1Q6ZNB6 911 aa29.49■■■□□ 2.31
SHMT1-207ENST00000580002 IQCA1Q86XH1 822 aa29.49■■■□□ 2.31
SHMT1-207ENST00000580002 NEDD1Q8NHV4 660 aa29.49■■■□□ 2.31
SHMT1-207ENST00000580002 ZNF287Q9HBT7 754 aa29.49■■■□□ 2.31
SHMT1-207ENST00000580002 TATDN1Q6P1N9 297 aa29.48■■■□□ 2.31
SHMT1-207ENST00000580002 CCDC144CPQ8IYA2 1237 aa29.48■■■□□ 2.31
SHMT1-207ENST00000580002 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.48■■■□□ 2.31
SHMT1-207ENST00000580002 PPFIA3O75145 1194 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 GDF11O95390 407 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 HSP90AA1P07900 732 aaKnown RBP29.47■■■□□ 2.31
SHMT1-207ENST00000580002 SGMS1Q86VZ5 419 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 ERICH2A1L162 156 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 PFKFB2O60825 505 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 TNFAIP1Q13829 316 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 SART3Q15020 963 aaKnown RBP29.47■■■□□ 2.31
SHMT1-207ENST00000580002 APOA5Q6Q788 366 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 CHMP4CQ96CF2 233 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 ZNF274Q96GC6 653 aaPredicted RBP29.47■■■□□ 2.31
SHMT1-207ENST00000580002 TRIM34Q9BYJ4 488 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 SH2B1Q9NRF2 756 aaPredicted RBP29.47■■■□□ 2.31
SHMT1-207ENST00000580002 FZD1Q9UP38 647 aa29.47■■■□□ 2.31
SHMT1-207ENST00000580002 GOLGA8BA8MQT2 603 aa29.46■■■□□ 2.31
SHMT1-207ENST00000580002 CERKLQ49MI3 558 aaPredicted RBP29.46■■■□□ 2.31
SHMT1-207ENST00000580002 CEP95Q96GE4 821 aa29.46■■■□□ 2.31
SHMT1-207ENST00000580002 TAF1DQ9H5J8 278 aaPredicted RBP29.46■■■□□ 2.31
SHMT1-207ENST00000580002 POLR2AP24928 1970 aaKnown RBP29.46■■■□□ 2.31
SHMT1-207ENST00000580002 MPHOSPH10O00566 681 aaKnown RBP29.45■■■□□ 2.31
SHMT1-207ENST00000580002 IFIT1BQ5T764 474 aaKnown RBP29.45■■■□□ 2.31
SHMT1-207ENST00000580002 GTF3C6Q969F1 213 aa29.45■■■□□ 2.31
SHMT1-207ENST00000580002 MTA3Q9BTC8 594 aa29.45■■■□□ 2.31
SHMT1-207ENST00000580002 TCP11L1Q9NUJ3 509 aa29.45■■■□□ 2.31
SHMT1-207ENST00000580002 CCDC69A6NI79 296 aa29.44■■■□□ 2.3
SHMT1-207ENST00000580002 MICU3Q86XE3 530 aa29.44■■■□□ 2.3
SHMT1-207ENST00000580002 POTEIP0CG38 1075 aa29.44■■■□□ 2.3
SHMT1-207ENST00000580002 POTEJP0CG39 1038 aa29.44■■■□□ 2.3
SHMT1-207ENST00000580002 EAPPQ56P03 285 aaPredicted RBP29.44■■■□□ 2.3
SHMT1-207ENST00000580002 APOBEC3FQ8IUX4 373 aaKnown RBP29.44■■■□□ 2.3
SHMT1-207ENST00000580002 FRMD4AQ9P2Q2 1039 aaPredicted RBP29.44■■■□□ 2.3
SHMT1-207ENST00000580002 IGKV6D-41A0A0C4DH26 115 aa29.43■■■□□ 2.3
SHMT1-207ENST00000580002 ADM5C9JUS6 153 aa29.43■■■□□ 2.3
SHMT1-207ENST00000580002 CDC27P30260 824 aa29.43■■■□□ 2.3
SHMT1-207ENST00000580002 GUCY1A2P33402 732 aa29.43■■■□□ 2.3
SHMT1-207ENST00000580002 HERC5Q9UII4 1024 aaKnown RBP29.43■■■□□ 2.3
SHMT1-207ENST00000580002 SLC12A7Q9Y666 1083 aa29.43■■■□□ 2.3
SHMT1-207ENST00000580002 CTDNEP1O95476 244 aa29.42■■■□□ 2.3
SHMT1-207ENST00000580002 ZNF654Q8IZM8 581 aa29.42■■■□□ 2.3
SHMT1-207ENST00000580002 FAM217BQ9NTX9 383 aaPredicted RBP29.42■■■□□ 2.3
SHMT1-207ENST00000580002 STX8Q9UNK0 236 aa29.42■■■□□ 2.3
SHMT1-207ENST00000580002 JAK2O60674 1132 aa29.41■■■□□ 2.3
SHMT1-207ENST00000580002 ADD1P35611 737 aaKnown RBP29.41■■■□□ 2.3
SHMT1-207ENST00000580002 USP50Q70EL3 339 aaPredicted RBP29.41■■■□□ 2.3
SHMT1-207ENST00000580002 RASGRP2Q7LDG7 609 aa29.41■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms