RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 RWDD1Q9H446 243 aaPredicted RBP17.89■□□□□ 0.45
SS18-212ENST00000579061 MCM9Q9NXL9 1143 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 ZBTB21Q9ULJ3 1066 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 AGTPBP1Q9UPW5 1226 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 HPS5Q9UPZ3 1129 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 SALL3Q9BXA9 1300 aa17.89■□□□□ 0.45
SS18-212ENST00000579061 MX1P20591 662 aa17.88■□□□□ 0.45
SS18-212ENST00000579061 PLCD1P51178 756 aa17.88■□□□□ 0.45
SS18-212ENST00000579061 JAG1P78504 1218 aa17.88■□□□□ 0.45
SS18-212ENST00000579061 GABPAQ06546 454 aa17.88■□□□□ 0.45
SS18-212ENST00000579061 SLFNL1Q499Z3 407 aa17.88■□□□□ 0.45
SS18-212ENST00000579061 PTPN22Q9Y2R2 807 aa17.88■□□□□ 0.45
SS18-212ENST00000579061 MYH8P13535 1937 aa17.88■□□□□ 0.45
SS18-212ENST00000579061 C19orf81C9J6K1 198 aa17.87■□□□□ 0.45
SS18-212ENST00000579061 GDF11O95390 407 aa17.87■□□□□ 0.45
SS18-212ENST00000579061 GNRH1P01148 92 aa17.87■□□□□ 0.45
SS18-212ENST00000579061 BACE1P56817 501 aa17.87■□□□□ 0.45
SS18-212ENST00000579061 LACTBP83111 547 aaPredicted RBP17.87■□□□□ 0.45
SS18-212ENST00000579061 PABPC4Q13310 644 aaKnown RBP eCLIP17.87■□□□□ 0.45
SS18-212ENST00000579061 EXOC6Q8TAG9 804 aa17.87■□□□□ 0.45
SS18-212ENST00000579061 OTUD7AQ8TE49 926 aaPredicted RBP17.87■□□□□ 0.45
SS18-212ENST00000579061 APPBP2Q92624 585 aa17.87■□□□□ 0.45
SS18-212ENST00000579061 PUS7LQ9H0K6 701 aaKnown RBP17.87■□□□□ 0.45
SS18-212ENST00000579061 CPA4Q9UI42 421 aa17.87■□□□□ 0.45
SS18-212ENST00000579061 PNMA3Q9UL41 463 aa17.87■□□□□ 0.45
SS18-212ENST00000579061 SUPT16HQ9Y5B9 1047 aaKnown RBP17.87■□□□□ 0.45
SS18-212ENST00000579061 RNF113AO15541 343 aaKnown RBP17.86■□□□□ 0.45
SS18-212ENST00000579061 PRKAB2O43741 272 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 CHGBP05060 677 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 CYP2C8P10632 490 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 BCRP11274 1271 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 SHMT1P34896 483 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 HMGCS2P54868 508 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 CAP1Q01518 475 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 CERKLQ49MI3 558 aaPredicted RBP17.86■□□□□ 0.45
SS18-212ENST00000579061 SMC5Q8IY18 1101 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 DDRGK1Q96HY6 314 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 STAP2Q9UGK3 403 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 SWAP70Q9UH65 585 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 MGAMO43451 1857 aa17.86■□□□□ 0.45
SS18-212ENST00000579061 USP17L10C9JJH3 530 aa17.85■□□□□ 0.45
SS18-212ENST00000579061 GH2P01242 217 aa17.85■□□□□ 0.45
SS18-212ENST00000579061 RGS19P49795 217 aa17.85■□□□□ 0.45
SS18-212ENST00000579061 ABCB5Q2M3G0 1257 aa17.85■□□□□ 0.45
SS18-212ENST00000579061 AMOTL1Q8IY63 956 aa17.85■□□□□ 0.45
SS18-212ENST00000579061 CABP5Q9NP86 173 aa17.85■□□□□ 0.45
SS18-212ENST00000579061 SLC4A4Q9Y6R1 1079 aa17.85■□□□□ 0.45
SS18-212ENST00000579061 ZSWIM8A7E2V4 1837 aa17.84■□□□□ 0.45
SS18-212ENST00000579061 PRMT2P55345 433 aa17.84■□□□□ 0.45
SS18-212ENST00000579061 MTMR2Q13614 643 aa17.84■□□□□ 0.45
SS18-212ENST00000579061 SHROOM1Q2M3G4 852 aaPredicted RBP17.84■□□□□ 0.45
SS18-212ENST00000579061 TREML2Q5T2D2 321 aa17.84■□□□□ 0.45
SS18-212ENST00000579061 C12orf60Q5U649 245 aa17.84■□□□□ 0.45
SS18-212ENST00000579061 GIMAP6Q6P9H5 292 aa17.84■□□□□ 0.45
SS18-212ENST00000579061 OSBP2Q969R2 916 aa17.84■□□□□ 0.45
SS18-212ENST00000579061 STRBPQ96SI9 672 aaKnown RBP17.84■□□□□ 0.45
SS18-212ENST00000579061 TMOD4Q9NZQ9 345 aa17.84■□□□□ 0.45
SS18-212ENST00000579061 HTTP42858 3142 aa17.84■□□□□ 0.45
SS18-212ENST00000579061 OSBPP22059 807 aa17.83■□□□□ 0.44
SS18-212ENST00000579061 HOXA7P31268 230 aaPredicted RBP17.83■□□□□ 0.44
SS18-212ENST00000579061 PDE1AP54750 535 aa17.83■□□□□ 0.44
SS18-212ENST00000579061 SMCR8Q8TEV9 937 aaPredicted RBP17.83■□□□□ 0.44
SS18-212ENST00000579061 USP17L12C9JPN9 530 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 USP17L21D6R901 530 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 CYP2D6P10635 497 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 GNAT2P19087 354 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 HOXD10P28358 340 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 PSMC4P43686 418 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 GCLCP48506 637 aaPredicted RBP17.82■□□□□ 0.44
SS18-212ENST00000579061 USP17L2Q6R6M4 530 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 TICAM2Q86XR7 235 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 FSD1Q9BTV5 496 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 ARHGAP39Q9C0H5 1083 aa17.82■□□□□ 0.44
SS18-212ENST00000579061 ARPP21Q9UBL0 812 aaPredicted RBP17.82■□□□□ 0.44
SS18-212ENST00000579061 GSG1L2A8MUP6 293 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 GPAA1O43292 621 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 USP14P54578 494 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 EVX2Q03828 476 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 RAB3GAP1Q15042 981 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 SBK1Q52WX2 424 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 CTR9Q6PD62 1173 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 C12orf42Q96LP6 360 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 CCDC17Q96LX7 622 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 KIAA1683Q9H0B3 1180 aa17.81■□□□□ 0.44
SS18-212ENST00000579061 ASCC2Q9H1I8 757 aaPredicted RBP17.81■□□□□ 0.44
SS18-212ENST00000579061 IGHDP01880 384 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 CTGFP29279 349 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 GUCY1A2P33402 732 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 FAM110CQ1W6H9 321 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 ZMYM1Q5SVZ6 1142 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 C16orf86Q6ZW13 317 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 ARMC5Q96C12 935 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 EVI5LQ96CN4 794 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 DYNLL2Q96FJ2 89 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 TRIM47Q96LD4 638 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 LNPKQ9C0E8 428 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 EMILIN3Q9NT22 766 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 SRRDQ9UH36 339 aa17.8■□□□□ 0.44
SS18-212ENST00000579061 DOCK3Q8IZD9 2030 aa17.79■□□□□ 0.44
SS18-212ENST00000579061 FMNL1O95466 1100 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms