RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CREB3O43889 395 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 XYLBO75191 536 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 CYP2E1P05181 493 aaPredicted RBP7.58□□□□□ -1.2
VPS53-219ENST00000576019 TFE3P19532 575 aaPredicted RBP7.58□□□□□ -1.2
VPS53-219ENST00000576019 GRNP28799 593 aaKnown RBP7.58□□□□□ -1.2
VPS53-219ENST00000576019 MCM4P33991 863 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 GGCXP38435 758 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 GIPRP48546 466 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 FAM50AQ14320 339 aaKnown RBP7.58□□□□□ -1.2
VPS53-219ENST00000576019 TCEA2Q15560 299 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 C4orf17Q53FE4 359 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 PEAR1Q5VY43 1037 aaPredicted RBP7.58□□□□□ -1.2
VPS53-219ENST00000576019 BICDL1Q6ZP65 573 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 KRT26Q7Z3Y9 468 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS53-219ENST00000576019 PLD4Q96BZ4 506 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 C8orf48Q96LL4 319 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 TNKS2Q9H2K2 1166 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 ZNF395Q9H8N7 513 aaPredicted RBP7.58□□□□□ -1.2
VPS53-219ENST00000576019 ATP8A1Q9Y2Q0 1164 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 CNTNAP1P78357 1384 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 KIF15Q9NS87 1388 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 GCC2Q8IWJ2 1684 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 PHRF1Q9P1Y6 1649 aaKnown RBP7.57□□□□□ -1.2
VPS53-219ENST00000576019 NRXN3Q9Y4C0 1643 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 TMEM238LA0A1B0GVL6 79 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 RNF223E7ERA6 249 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 SIAH2O43255 324 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 GJB6O95452 261 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 IRX6P78412 446 aaPredicted RBP7.57□□□□□ -1.2
VPS53-219ENST00000576019 EXOSC10Q01780 885 aaKnown RBP7.57□□□□□ -1.2
VPS53-219ENST00000576019 BIRC2Q13490 618 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 SPATC1Q76KD6 591 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 APBB1IPQ7Z5R6 666 aaPredicted RBP7.57□□□□□ -1.2
VPS53-219ENST00000576019 SNX27Q96L92 541 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 RPS6KC1Q96S38 1066 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 CRBNQ96SW2 442 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 RBSNQ9H1K0 784 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 ZDHHC3Q9NYG2 299 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 OVOS2A0A0G2JMS6 1433 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 OVOS2A0A0J9YW53 1432 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 TNS3Q68CZ2 1445 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 OVOS2Q6IE36 1432 aa7.57□□□□□ -1.2
VPS53-219ENST00000576019 ZNF644Q9H582 1327 aaPredicted RBP7.56□□□□□ -1.2
VPS53-219ENST00000576019 CCDC144AA2RUR9 1427 aa7.56□□□□□ -1.2
VPS53-219ENST00000576019 TECPR2O15040 1411 aa7.56□□□□□ -1.2
VPS53-219ENST00000576019 B2RBV5 119 aa7.56□□□□□ -1.2
VPS53-219ENST00000576019 TATP17735 454 aaPredicted RBP7.56□□□□□ -1.2
VPS53-219ENST00000576019 PHKA2P46019 1235 aa7.56□□□□□ -1.2
VPS53-219ENST00000576019 FXNQ16595 210 aa7.56□□□□□ -1.2
VPS53-219ENST00000576019 TTBK2Q6IQ55 1244 aa7.56□□□□□ -1.2
VPS53-219ENST00000576019 PTF1AQ7RTS3 328 aa7.56□□□□□ -1.2
VPS53-219ENST00000576019 MCOLN1Q9GZU1 580 aa7.56□□□□□ -1.2
VPS53-219ENST00000576019 LIN7BQ9HAP6 207 aa7.56□□□□□ -1.2
VPS53-219ENST00000576019 CCDC18Q5T9S5 1454 aa7.55□□□□□ -1.2
VPS53-219ENST00000576019 HFM1A2PYH4 1435 aa7.55□□□□□ -1.2
VPS53-219ENST00000576019 F13A1P00488 732 aa7.55□□□□□ -1.2
VPS53-219ENST00000576019 POU3F3P20264 500 aaPredicted RBP7.55□□□□□ -1.2
VPS53-219ENST00000576019 SSRP1Q08945 709 aaKnown RBP7.55□□□□□ -1.2
VPS53-219ENST00000576019 SLC27A3Q5K4L6 730 aa7.55□□□□□ -1.2
VPS53-219ENST00000576019 TTC39BQ5VTQ0 682 aaPredicted RBP7.55□□□□□ -1.2
VPS53-219ENST00000576019 KANK3Q6NY19 840 aa7.55□□□□□ -1.2
VPS53-219ENST00000576019 BNC2Q6ZN30 1099 aaPredicted RBP7.55□□□□□ -1.2
VPS53-219ENST00000576019 LRRC69Q6ZNQ3 347 aa7.55□□□□□ -1.2
VPS53-219ENST00000576019 GEMIN8Q9NWZ8 242 aaKnown RBP7.55□□□□□ -1.2
VPS53-219ENST00000576019 ANKIB1Q9P2G1 1089 aa7.55□□□□□ -1.2
VPS53-219ENST00000576019 PLAAQ9Y263 795 aa7.55□□□□□ -1.2
VPS53-219ENST00000576019 PARP4Q9UKK3 1724 aaKnown RBP7.55□□□□□ -1.2
VPS53-219ENST00000576019 KCPQ6ZWJ8 1503 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 EDN3P14138 238 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 PPP2R5EQ16537 467 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 MAP9Q49MG5 647 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 AGMOQ6ZNB7 445 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 NLRP13Q86W25 1043 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 LSRQ86X29 649 aaPredicted RBP7.54□□□□□ -1.2
VPS53-219ENST00000576019 DDX42Q86XP3 938 aaKnown RBP eCLIP7.54□□□□□ -1.2
VPS53-219ENST00000576019 CHAC2Q8WUX2 184 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 PMEPA1Q969W9 287 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 EVI5LQ96CN4 794 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 UNC80Q8N2C7 3258 aa7.54□□□□□ -1.2
VPS53-219ENST00000576019 IRS4O14654 1257 aaPredicted RBP7.53□□□□□ -1.2
VPS53-219ENST00000576019 ENC1O14682 589 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 DDAH1O94760 285 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 MYCLP1P12525 358 aaPredicted RBP7.53□□□□□ -1.2
VPS53-219ENST00000576019 EPB42P16452 691 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 NNTQ13423 1086 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 ZNF827Q17R98 1081 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 AXDND1Q5T1B0 1012 aaPredicted RBP7.53□□□□□ -1.2
VPS53-219ENST00000576019 GK5Q6ZS86 529 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 Q6ZVU0 165 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 THNSL2Q86YJ6 484 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 ANKLE1Q8NAG6 615 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 OR6P1Q8NGX9 317 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 TCF12Q99081 682 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 LRRC3Q9BY71 257 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 CEP44Q9C0F1 390 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 ZMYM5Q9UJ78 669 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 GPC6Q9Y625 555 aaPredicted RBP7.53□□□□□ -1.2
VPS53-219ENST00000576019 METP08581 1390 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 PLEKHG2Q9H7P9 1386 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms