RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 TMEM74Q96NL1 305 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 TPX2Q9ULW0 747 aaKnown RBP5.51□□□□□ -1.53
NUP88-209ENST00000574855 PLAGL2Q9UPG8 496 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 U3KQE9 123 aa5.51□□□□□ -1.53
NUP88-209ENST00000574855 PAX4O43316 350 aa5.5□□□□□ -1.53
NUP88-209ENST00000574855 SLITRK5O94991 958 aa5.5□□□□□ -1.53
NUP88-209ENST00000574855 CST3P01034 146 aaPredicted RBP5.5□□□□□ -1.53
NUP88-209ENST00000574855 PGRP06401 933 aa5.5□□□□□ -1.53
NUP88-209ENST00000574855 GBP2P32456 591 aaPredicted RBP5.5□□□□□ -1.53
NUP88-209ENST00000574855 LMNB2Q03252 620 aa5.5□□□□□ -1.53
NUP88-209ENST00000574855 PLCL1Q15111 1095 aa5.5□□□□□ -1.53
NUP88-209ENST00000574855 PRAMEF13Q5VWM6 474 aa5.5□□□□□ -1.53
NUP88-209ENST00000574855 ZNF746Q6NUN9 644 aaPredicted RBP5.5□□□□□ -1.53
NUP88-209ENST00000574855 MIPEPQ99797 713 aa5.5□□□□□ -1.53
NUP88-209ENST00000574855 TNKS2Q9H2K2 1166 aa5.5□□□□□ -1.53
NUP88-209ENST00000574855 MAPK8IP1Q9UQF2 711 aa5.5□□□□□ -1.53
NUP88-209ENST00000574855 MINDY4BA8MYZ0 360 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 F6X3S4 739 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 PF4P02776 101 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 CD8BP10966 210 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 SFRP5Q5T4F7 317 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 SLC6A19Q695T7 634 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 LETMD1Q6P1Q0 360 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 BNC2Q6ZN30 1099 aaPredicted RBP5.49□□□□□ -1.53
NUP88-209ENST00000574855 ZNF574Q6ZN55 896 aaPredicted RBP5.49□□□□□ -1.53
NUP88-209ENST00000574855 CBLL1Q75N03 491 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 ASB11Q8WXH4 323 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 GATAD2BQ8WXI9 593 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 ADAM30Q9UKF2 790 aa5.49□□□□□ -1.53
NUP88-209ENST00000574855 FAM221AA4D161 298 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 CILPO75339 1184 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 F13A1P00488 732 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 FUT4P22083 530 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 CYP7A1P22680 504 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 CLCN7P51798 805 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 MCATQ8IVS2 390 aaKnown RBP5.48□□□□□ -1.53
NUP88-209ENST00000574855 MRPL41Q8IXM3 137 aaKnown RBP5.48□□□□□ -1.53
NUP88-209ENST00000574855 RIN3Q8TB24 985 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 XAGE3Q8WTP9 111 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 TMEM87BQ96K49 555 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 GOLGA2P5Q9HBQ8 144 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 TJP2Q9UDY2 1190 aa5.48□□□□□ -1.53
NUP88-209ENST00000574855 FAM155AB1AL88 458 aaPredicted RBP5.47□□□□□ -1.53
NUP88-209ENST00000574855 NKPD1Q17RQ9 610 aa5.47□□□□□ -1.53
NUP88-209ENST00000574855 SNAP47Q5SQN1 464 aa5.47□□□□□ -1.53
NUP88-209ENST00000574855 ANGEL2Q5VTE6 544 aaKnown RBP5.47□□□□□ -1.53
NUP88-209ENST00000574855 WFDC3Q8IUB2 231 aa5.47□□□□□ -1.53
NUP88-209ENST00000574855 SPACA3Q8IXA5 215 aa5.47□□□□□ -1.53
NUP88-209ENST00000574855 GOLM1Q8NBJ4 401 aa5.47□□□□□ -1.53
NUP88-209ENST00000574855 PI4K2BQ8TCG2 481 aa5.47□□□□□ -1.53
NUP88-209ENST00000574855 COX4I2Q96KJ9 171 aa5.47□□□□□ -1.53
NUP88-209ENST00000574855 RHOVQ96L33 236 aa5.47□□□□□ -1.53
NUP88-209ENST00000574855 PLCG1P19174 1290 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 CD96P40200 585 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 ETV3P41162 512 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 MRPL58Q14197 206 aaKnown RBP5.46□□□□□ -1.54
NUP88-209ENST00000574855 ZNF792Q3KQV3 632 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 C22orf34Q6ZV56 151 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 ERMP1Q7Z2K6 904 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 CDH24Q86UP0 819 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 MFSD4AQ8N468 514 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 ACSF2Q96CM8 615 aaPredicted RBP5.46□□□□□ -1.54
NUP88-209ENST00000574855 DPH2Q9BQC3 489 aaPredicted RBP5.46□□□□□ -1.54
NUP88-209ENST00000574855 KBTBD4Q9NVX7 518 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 CNTNAP4Q9C0A0 1308 aa5.46□□□□□ -1.54
NUP88-209ENST00000574855 ROBO2Q9HCK4 1378 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 PRR33A8MZF0 331 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 BIN1O00499 593 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 CBX7O95931 251 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 ZNF865P0CJ78 1059 aaPredicted RBP5.45□□□□□ -1.54
NUP88-209ENST00000574855 ZNF16P17020 682 aaPredicted RBP5.45□□□□□ -1.54
NUP88-209ENST00000574855 JUNBP17275 347 aaPredicted RBP5.45□□□□□ -1.54
NUP88-209ENST00000574855 KIR3DL1P43629 444 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 YARSP54577 528 aaKnown RBP5.45□□□□□ -1.54
NUP88-209ENST00000574855 FAM160A1Q05DH4 1040 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 IKZF1Q13422 519 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 TMEM201Q5SNT2 666 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 CDKAL1Q5VV42 579 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 HS2ST1Q7LGA3 356 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 ASIC4Q96FT7 647 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 GGT7Q9UJ14 662 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 CORINQ9Y5Q5 1042 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 PRR36Q9H6K5 1346 aa5.45□□□□□ -1.54
NUP88-209ENST00000574855 ITGB5P18084 799 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 EIF4A3P38919 411 aaKnown RBP5.44□□□□□ -1.54
NUP88-209ENST00000574855 TXKP42681 527 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 MFAP1P55081 439 aaKnown RBP5.44□□□□□ -1.54
NUP88-209ENST00000574855 ZP2Q05996 745 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 MPP2Q14168 576 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 SLC23A3Q6PIS1 610 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 FAM196AQ6ZSG2 479 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 FAM13CQ8NE31 585 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 HSPA12BQ96MM6 686 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 KRTAP4-2Q9BYR5 136 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 RC3H2Q9HBD1 1191 aaKnown RBP5.44□□□□□ -1.54
NUP88-209ENST00000574855 COPRSQ9NQ92 184 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 MBNL3Q9NUK0 354 aaKnown RBP5.44□□□□□ -1.54
NUP88-209ENST00000574855 LMCD1Q9NZU5 365 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 CEP131Q9UPN4 1083 aa5.44□□□□□ -1.54
NUP88-209ENST00000574855 RNF114Q9Y508 228 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms