RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 TEX13AQ9BXU3 409 aaPredicted RBP19.51■□□□□ 0.71
VPS53-215ENST00000573028 MYO5AQ9Y4I1 1855 aaKnown RBP19.51■□□□□ 0.71
VPS53-215ENST00000573028 ARID4AP29374 1257 aaPredicted RBP19.51■□□□□ 0.71
VPS53-215ENST00000573028 TRERF1Q96PN7 1200 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 C4AP0C0L4 1744 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 C4BP0C0L5 1744 aa19.51■□□□□ 0.71
VPS53-215ENST00000573028 STX10O60499 249 aa19.5■□□□□ 0.71
VPS53-215ENST00000573028 DEXIO95424 95 aa19.5■□□□□ 0.71
VPS53-215ENST00000573028 ZNF654Q8IZM8 581 aa19.5■□□□□ 0.71
VPS53-215ENST00000573028 CRACR2BQ8N4Y2 399 aaPredicted RBP19.5■□□□□ 0.71
VPS53-215ENST00000573028 A0A0U1RQJ8 604 aa19.5■□□□□ 0.71
VPS53-215ENST00000573028 BRINP3Q76B58 766 aa19.5■□□□□ 0.71
VPS53-215ENST00000573028 DZIP3Q86Y13 1208 aaKnown RBP19.5■□□□□ 0.71
VPS53-215ENST00000573028 FANCBQ8NB91 859 aa19.5■□□□□ 0.71
VPS53-215ENST00000573028 ENOX1Q8TC92 643 aaKnown RBP19.5■□□□□ 0.71
VPS53-215ENST00000573028 ATRIPQ8WXE1 791 aa19.5■□□□□ 0.71
VPS53-215ENST00000573028 MRPL44Q9H9J2 332 aaKnown RBP19.5■□□□□ 0.71
VPS53-215ENST00000573028 MORC3Q14149 939 aa19.49■□□□□ 0.71
VPS53-215ENST00000573028 CDHR2Q9BYE9 1310 aa19.49■□□□□ 0.71
VPS53-215ENST00000573028 TBX2Q13207 712 aaPredicted RBP19.49■□□□□ 0.71
VPS53-215ENST00000573028 PPFIBP1Q86W92 1011 aa19.49■□□□□ 0.71
VPS53-215ENST00000573028 FCHSD1Q86WN1 690 aa19.49■□□□□ 0.71
VPS53-215ENST00000573028 PUF60Q9UHX1 559 aaKnown RBP19.49■□□□□ 0.71
VPS53-215ENST00000573028 ZNF18P17022 549 aa19.49■□□□□ 0.71
VPS53-215ENST00000573028 ZNF512BQ96KM6 892 aaPredicted RBP19.49■□□□□ 0.71
VPS53-215ENST00000573028 FOXP1Q9H334 677 aaPredicted RBP19.49■□□□□ 0.71
VPS53-215ENST00000573028 ZNF142P52746 1687 aaPredicted RBP19.49■□□□□ 0.71
VPS53-215ENST00000573028 STK36Q9NRP7 1315 aa19.49■□□□□ 0.71
VPS53-215ENST00000573028 CCDC66A2RUB6 948 aa19.48■□□□□ 0.71
VPS53-215ENST00000573028 ADAMTSL3P82987 1691 aa19.48■□□□□ 0.71
VPS53-215ENST00000573028 ACTN4O43707 911 aaKnown RBP19.48■□□□□ 0.71
VPS53-215ENST00000573028 ALX1Q15699 326 aa19.48■□□□□ 0.71
VPS53-215ENST00000573028 IGSF22Q8N9C0 903 aa19.48■□□□□ 0.71
VPS53-215ENST00000573028 AKR1B15C9JRZ8 316 aaPredicted RBP19.47■□□□□ 0.71
VPS53-215ENST00000573028 ZRANB2O95218 330 aaKnown RBP eCLIP19.47■□□□□ 0.71
VPS53-215ENST00000573028 SLC4A9Q96Q91 983 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 SRPRBQ9Y5M8 271 aaKnown RBP19.47■□□□□ 0.71
VPS53-215ENST00000573028 AKAP11Q9UKA4 1901 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 A0A087X0B3 334 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 A0A0U1RQG5 324 aaPredicted RBP19.47■□□□□ 0.71
VPS53-215ENST00000573028 CCDC196A0A1B0GTZ2 297 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 TRIM75PA6NK02 468 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 ZBTB22O15209 634 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 CYP7A1P22680 504 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 HSPA2P54652 639 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 RBL2Q08999 1139 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 ZNF174Q15697 407 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 EARS2Q5JPH6 523 aaKnown RBP19.47■□□□□ 0.71
VPS53-215ENST00000573028 CEP131Q9UPN4 1083 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 CYP2D7A0A087X1C5 515 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 GOLGA6L9A6NEM1 432 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 SASH3O75995 380 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 CCT6AP40227 531 aaKnown RBP19.47■□□□□ 0.71
VPS53-215ENST00000573028 PLCD1P51178 756 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 MAP3K9P80192 1104 aa19.47■□□□□ 0.71
VPS53-215ENST00000573028 MYH7P12883 1935 aa19.46■□□□□ 0.71
VPS53-215ENST00000573028 MYO1BO43795 1136 aa19.46■□□□□ 0.71
VPS53-215ENST00000573028 CCDC175P0C221 793 aa19.46■□□□□ 0.71
VPS53-215ENST00000573028 NOM1Q5C9Z4 860 aaKnown RBP19.46■□□□□ 0.71
VPS53-215ENST00000573028 PARD6BQ9BYG5 372 aa19.46■□□□□ 0.71
VPS53-215ENST00000573028 MRFAP1Q9Y605 127 aa19.46■□□□□ 0.71
VPS53-215ENST00000573028 V9GY48 417 aaPredicted RBP19.46■□□□□ 0.71
VPS53-215ENST00000573028 CD44P16070 742 aaKnown RBP19.46■□□□□ 0.71
VPS53-215ENST00000573028 SARSP49591 514 aaKnown RBP19.46■□□□□ 0.71
VPS53-215ENST00000573028 TNKSO95271 1327 aa19.46■□□□□ 0.71
VPS53-215ENST00000573028 ATRNO75882 1429 aa19.46■□□□□ 0.71
VPS53-215ENST00000573028 COL5A2P05997 1499 aaPredicted RBP19.46■□□□□ 0.71
VPS53-215ENST00000573028 TNS2Q63HR2 1409 aa19.46■□□□□ 0.71
VPS53-215ENST00000573028 GYS2P54840 703 aa19.46■□□□□ 0.7
VPS53-215ENST00000573028 NEK11Q8NG66 645 aa19.46■□□□□ 0.7
VPS53-215ENST00000573028 SYMPKQ92797 1274 aaKnown RBP19.46■□□□□ 0.7
VPS53-215ENST00000573028 ARFGAP3Q9NP61 516 aa19.46■□□□□ 0.7
VPS53-215ENST00000573028 MROH5Q6ZUA9 1318 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 SYNRGQ9UMZ2 1314 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 CYP19A1P11511 503 aaPredicted RBP19.45■□□□□ 0.7
VPS53-215ENST00000573028 PPARAQ07869 468 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 NR1I3Q14994 352 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 CC2D1AQ6P1N0 951 aaPredicted RBP19.45■□□□□ 0.7
VPS53-215ENST00000573028 RAD9BQ6WBX8 426 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 BLZF1Q9H2G9 400 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 WNT7AO00755 349 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 TFRCP02786 760 aaKnown RBP19.45■□□□□ 0.7
VPS53-215ENST00000573028 TPM1P09493 284 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 FGFR2P21802 821 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 OAS2P29728 719 aaKnown RBP19.45■□□□□ 0.7
VPS53-215ENST00000573028 KANK3Q6NY19 840 aa19.45■□□□□ 0.7
VPS53-215ENST00000573028 STAG1Q8WVM7 1258 aa19.44■□□□□ 0.7
VPS53-215ENST00000573028 BAZ2BQ9UIF8 2168 aaKnown RBP19.44■□□□□ 0.7
VPS53-215ENST00000573028 TBC1D8O95759 1140 aa19.44■□□□□ 0.7
VPS53-215ENST00000573028 ZNF569Q5MCW4 686 aa19.44■□□□□ 0.7
VPS53-215ENST00000573028 GPR161Q8N6U8 529 aaKnown RBP19.44■□□□□ 0.7
VPS53-215ENST00000573028 KIFC2Q96AC6 838 aa19.44■□□□□ 0.7
VPS53-215ENST00000573028 PLEKHA8P1O95397 391 aa19.44■□□□□ 0.7
VPS53-215ENST00000573028 XBP1P17861 261 aa19.44■□□□□ 0.7
VPS53-215ENST00000573028 CASP14P31944 242 aa19.44■□□□□ 0.7
VPS53-215ENST00000573028 GOLGA1Q92805 767 aa19.44■□□□□ 0.7
VPS53-215ENST00000573028 MAPK8IP1Q9UQF2 711 aa19.44■□□□□ 0.7
VPS53-215ENST00000573028 NT5DC1Q5TFE4 455 aa19.43■□□□□ 0.7
VPS53-215ENST00000573028 SUSD4Q5VX71 490 aa19.43■□□□□ 0.7
VPS53-215ENST00000573028 ADGRA1Q86SQ6 560 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms