RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 CPA4Q9UI42 421 aa24.25■■□□□ 1.47
NUP88-204ENST00000572290 AGTPBP1Q9UPW5 1226 aa24.25■■□□□ 1.47
NUP88-204ENST00000572290 HPS5Q9UPZ3 1129 aa24.25■■□□□ 1.47
NUP88-204ENST00000572290 SLC4A4Q9Y6R1 1079 aa24.25■■□□□ 1.47
NUP88-204ENST00000572290 DOCK1Q14185 1865 aa24.25■■□□□ 1.47
NUP88-204ENST00000572290 CYP2C8P10632 490 aa24.24■■□□□ 1.47
NUP88-204ENST00000572290 GABPAQ06546 454 aa24.24■■□□□ 1.47
NUP88-204ENST00000572290 CERKLQ49MI3 558 aaPredicted RBP24.24■■□□□ 1.47
NUP88-204ENST00000572290 SMC5Q8IY18 1101 aa24.24■■□□□ 1.47
NUP88-204ENST00000572290 APPBP2Q92624 585 aa24.24■■□□□ 1.47
NUP88-204ENST00000572290 DDRGK1Q96HY6 314 aa24.24■■□□□ 1.47
NUP88-204ENST00000572290 SIPA1L1O43166 1804 aa24.24■■□□□ 1.47
NUP88-204ENST00000572290 GH2P01242 217 aa24.23■■□□□ 1.47
NUP88-204ENST00000572290 IGHDP01880 384 aa24.23■■□□□ 1.47
NUP88-204ENST00000572290 CYP2D6P10635 497 aa24.23■■□□□ 1.47
NUP88-204ENST00000572290 SHMT1P34896 483 aa24.23■■□□□ 1.47
NUP88-204ENST00000572290 HMGCS2P54868 508 aa24.23■■□□□ 1.47
NUP88-204ENST00000572290 KIF22Q14807 665 aa24.23■■□□□ 1.47
NUP88-204ENST00000572290 SH3D19Q5HYK7 790 aa24.23■■□□□ 1.47
NUP88-204ENST00000572290 ADGRA2Q96PE1 1338 aa24.23■■□□□ 1.47
NUP88-204ENST00000572290 FOCADQ5VW36 1801 aa24.23■■□□□ 1.47
NUP88-204ENST00000572290 BACE1P56817 501 aa24.22■■□□□ 1.47
NUP88-204ENST00000572290 CAP1Q01518 475 aa24.22■■□□□ 1.47
NUP88-204ENST00000572290 EVX2Q03828 476 aa24.22■■□□□ 1.47
NUP88-204ENST00000572290 TREML2Q5T2D2 321 aa24.22■■□□□ 1.47
NUP88-204ENST00000572290 OSBP2Q969R2 916 aa24.22■■□□□ 1.47
NUP88-204ENST00000572290 STRBPQ96SI9 672 aaKnown RBP24.22■■□□□ 1.47
NUP88-204ENST00000572290 STAP2Q9UGK3 403 aa24.22■■□□□ 1.47
NUP88-204ENST00000572290 LACTBP83111 547 aaPredicted RBP24.21■■□□□ 1.47
NUP88-204ENST00000572290 MTMR2Q13614 643 aa24.21■■□□□ 1.47
NUP88-204ENST00000572290 ABCB5Q2M3G0 1257 aa24.21■■□□□ 1.47
NUP88-204ENST00000572290 B4GALNT3Q6L9W6 998 aa24.21■■□□□ 1.47
NUP88-204ENST00000572290 AMOTL1Q8IY63 956 aa24.21■■□□□ 1.47
NUP88-204ENST00000572290 FSD1Q9BTV5 496 aa24.21■■□□□ 1.47
NUP88-204ENST00000572290 LNPKQ9C0E8 428 aa24.21■■□□□ 1.47
NUP88-204ENST00000572290 CABP5Q9NP86 173 aa24.21■■□□□ 1.47
NUP88-204ENST00000572290 CDK5RAP2Q96SN8 1893 aa24.2■■□□□ 1.46
NUP88-204ENST00000572290 C19orf81C9J6K1 198 aa24.2■■□□□ 1.46
NUP88-204ENST00000572290 USP17L10C9JJH3 530 aa24.2■■□□□ 1.46
NUP88-204ENST00000572290 PDE1AP54750 535 aa24.2■■□□□ 1.46
NUP88-204ENST00000572290 PABPC4Q13310 644 aaKnown RBP eCLIP24.2■■□□□ 1.46
NUP88-204ENST00000572290 TMOD4Q9NZQ9 345 aa24.2■■□□□ 1.46
NUP88-204ENST00000572290 PNMA3Q9UL41 463 aa24.2■■□□□ 1.46
NUP88-204ENST00000572290 TAOK2Q9UL54 1235 aa24.2■■□□□ 1.46
NUP88-204ENST00000572290 PTPN22Q9Y2R2 807 aa24.2■■□□□ 1.46
NUP88-204ENST00000572290 USP17L12C9JPN9 530 aa24.19■■□□□ 1.46
NUP88-204ENST00000572290 USP17L21D6R901 530 aa24.19■■□□□ 1.46
NUP88-204ENST00000572290 BCRP11274 1271 aa24.19■■□□□ 1.46
NUP88-204ENST00000572290 RAB3GAP1Q15042 981 aa24.19■■□□□ 1.46
NUP88-204ENST00000572290 C12orf60Q5U649 245 aa24.19■■□□□ 1.46
NUP88-204ENST00000572290 SMCR8Q8TEV9 937 aaPredicted RBP24.19■■□□□ 1.46
NUP88-204ENST00000572290 ARHGAP39Q9C0H5 1083 aa24.19■■□□□ 1.46
NUP88-204ENST00000572290 SWAP70Q9UH65 585 aa24.19■■□□□ 1.46
NUP88-204ENST00000572290 IRX6P78412 446 aaPredicted RBP24.18■■□□□ 1.46
NUP88-204ENST00000572290 DYNLL2Q96FJ2 89 aa24.18■■□□□ 1.46
NUP88-204ENST00000572290 CYP2D7A0A087X1C5 515 aa24.17■■□□□ 1.46
NUP88-204ENST00000572290 GPAA1O43292 621 aa24.17■■□□□ 1.46
NUP88-204ENST00000572290 OSBPP22059 807 aa24.17■■□□□ 1.46
NUP88-204ENST00000572290 CTR9Q6PD62 1173 aa24.17■■□□□ 1.46
NUP88-204ENST00000572290 CHD1LQ86WJ1 897 aa24.17■■□□□ 1.46
NUP88-204ENST00000572290 SLC44A5Q8NCS7 719 aa24.17■■□□□ 1.46
NUP88-204ENST00000572290 DDX60LQ5H9U9 1706 aaKnown RBP24.17■■□□□ 1.46
NUP88-204ENST00000572290 M0R2C6 588 aa24.16■■□□□ 1.46
NUP88-204ENST00000572290 ECM2O94769 699 aaPredicted RBP24.16■■□□□ 1.46
NUP88-204ENST00000572290 GNAT2P19087 354 aa24.16■■□□□ 1.46
NUP88-204ENST00000572290 PSMC4P43686 418 aa24.16■■□□□ 1.46
NUP88-204ENST00000572290 NUCB1Q02818 461 aa24.16■■□□□ 1.46
NUP88-204ENST00000572290 GIMAP6Q6P9H5 292 aa24.16■■□□□ 1.46
NUP88-204ENST00000572290 EVI5LQ96CN4 794 aa24.16■■□□□ 1.46
NUP88-204ENST00000572290 ARPP21Q9UBL0 812 aaPredicted RBP24.16■■□□□ 1.46
NUP88-204ENST00000572290 PHIPQ8WWQ0 1821 aa24.15■■□□□ 1.46
NUP88-204ENST00000572290 GSG1L2A8MUP6 293 aa24.15■■□□□ 1.46
NUP88-204ENST00000572290 MPHOSPH10O00566 681 aaKnown RBP24.15■■□□□ 1.46
NUP88-204ENST00000572290 GNRH1P01148 92 aa24.15■■□□□ 1.46
NUP88-204ENST00000572290 ZMYM1Q5SVZ6 1142 aa24.15■■□□□ 1.46
NUP88-204ENST00000572290 USP17L2Q6R6M4 530 aa24.15■■□□□ 1.46
NUP88-204ENST00000572290 FEZ1Q99689 392 aa24.15■■□□□ 1.46
NUP88-204ENST00000572290 MYH1P12882 1939 aa24.14■■□□□ 1.46
NUP88-204ENST00000572290 SMIM22K7EJ46 135 aa24.14■■□□□ 1.45
NUP88-204ENST00000572290 GUCY1A2P33402 732 aa24.14■■□□□ 1.45
NUP88-204ENST00000572290 CDK8P49336 464 aa24.14■■□□□ 1.45
NUP88-204ENST00000572290 SEPT2Q15019 361 aa24.14■■□□□ 1.45
NUP88-204ENST00000572290 C16orf86Q6ZW13 317 aa24.14■■□□□ 1.45
NUP88-204ENST00000572290 NAV1Q8NEY1 1877 aa24.14■■□□□ 1.45
NUP88-204ENST00000572290 SEC62Q99442 399 aaKnown RBP24.14■■□□□ 1.45
NUP88-204ENST00000572290 ASCC2Q9H1I8 757 aaPredicted RBP24.14■■□□□ 1.45
NUP88-204ENST00000572290 EMILIN3Q9NT22 766 aa24.14■■□□□ 1.45
NUP88-204ENST00000572290 FMNL1O95466 1100 aaPredicted RBP24.13■■□□□ 1.45
NUP88-204ENST00000572290 CTGFP29279 349 aa24.13■■□□□ 1.45
NUP88-204ENST00000572290 HOXA7P31268 230 aaPredicted RBP24.13■■□□□ 1.45
NUP88-204ENST00000572290 USP14P54578 494 aa24.13■■□□□ 1.45
NUP88-204ENST00000572290 SBK1Q52WX2 424 aa24.13■■□□□ 1.45
NUP88-204ENST00000572290 ACER1Q8TDN7 264 aa24.13■■□□□ 1.45
NUP88-204ENST00000572290 TRIM47Q96LD4 638 aa24.13■■□□□ 1.45
NUP88-204ENST00000572290 PTCH2Q9Y6C5 1203 aa24.13■■□□□ 1.45
NUP88-204ENST00000572290 PATL2C9JE40 543 aaKnown RBP24.12■■□□□ 1.45
NUP88-204ENST00000572290 APPP05067 770 aa24.12■■□□□ 1.45
NUP88-204ENST00000572290 HOXD10P28358 340 aa24.12■■□□□ 1.45
NUP88-204ENST00000572290 GCLCP48506 637 aaPredicted RBP24.12■■□□□ 1.45
NUP88-204ENST00000572290 PRMT2P55345 433 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms