RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 AOX1Q06278 1338 aa7.5□□□□□ -1.21
VPS53-208ENST00000570650 DGAT1O75907 488 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 CETPP11597 493 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 CCL5P13501 91 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 UBXN2AP68543 259 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS53-208ENST00000570650 RAET1EQ8TD07 263 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 TRIM47Q96LD4 638 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 MPHOSPH8Q99549 860 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 TRIM34Q9BYJ4 488 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 RNF208Q9H0X6 261 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 SRRDQ9UH36 339 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 STXBP5LQ9Y2K9 1186 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 RIPOR2Q9Y4F9 1068 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 ZSWIM8A7E2V4 1837 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 COL6A3P12111 3177 aa7.49□□□□□ -1.21
VPS53-208ENST00000570650 MYH3P11055 1940 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 BTBD19C9JJ37 291 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 ITGA6P23229 1130 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 PSMC4P43686 418 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 RANBP2P49792 3224 aaKnown RBP7.48□□□□□ -1.21
VPS53-208ENST00000570650 CHRNDQ07001 517 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 SNAPC2Q13487 334 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 TRAF7Q6Q0C0 670 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 C17orf99Q6UX52 265 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 C15orf52Q6ZUT6 534 aaKnown RBP7.48□□□□□ -1.21
VPS53-208ENST00000570650 ZNF804AQ7Z570 1209 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 ARMC2Q8NEN0 867 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 U2AF1L4Q8WU68 220 aaKnown RBP7.48□□□□□ -1.21
VPS53-208ENST00000570650 TEPSINQ96N21 525 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 BIN2Q9UBW5 565 aaPredicted RBP7.48□□□□□ -1.21
VPS53-208ENST00000570650 ZNF70Q9UC06 446 aaPredicted RBP7.48□□□□□ -1.21
VPS53-208ENST00000570650 STAP2Q9UGK3 403 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 FKBPLQ9UIM3 349 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 MAP3K2Q9Y2U5 619 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 MYPNQ86TC9 1320 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 IRS2Q9Y4H2 1338 aa7.48□□□□□ -1.21
VPS53-208ENST00000570650 IL1R1P14778 569 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 CAPN2P17655 700 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 VARSP26640 1264 aaKnown RBP7.47□□□□□ -1.21
VPS53-208ENST00000570650 CTGFP29279 349 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 BMP8BP34820 402 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 TNNI2P48788 182 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 SH3BP5LQ7L8J4 393 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 SH3RF1Q7Z6J0 888 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 ERO1BQ86YB8 467 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 DEFB123Q8N688 67 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 COL25A1Q9BXS0 654 aaPredicted RBP7.47□□□□□ -1.21
VPS53-208ENST00000570650 TDRD3Q9H7E2 651 aaKnown RBP7.47□□□□□ -1.21
VPS53-208ENST00000570650 MBIPQ9NS73 344 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 CPA4Q9UI42 421 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 CUL9Q8IWT3 2517 aa7.47□□□□□ -1.21
VPS53-208ENST00000570650 TCP10L2B9ZVM9 353 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 SNAP23O00161 211 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 SGPL1O95470 568 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 IGKV5-2P06315 115 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 NEXNQ0ZGT2 675 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 PPIL2Q13356 520 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 AGERQ15109 404 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 KSR2Q6VAB6 950 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 UBE3BQ7Z3V4 1068 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 CCDC146Q8IYE0 955 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 WRNIP1Q96S55 665 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 GDF15Q99988 308 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 PLA2G12BQ9BX93 195 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 CHMP4AQ9BY43 222 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 TMEM39BQ9GZU3 492 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 SNRKQ9NRH2 765 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 SERPINA10Q9UK55 444 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 TTF2Q9UNY4 1162 aaKnown RBP7.46□□□□□ -1.22
VPS53-208ENST00000570650 JAG2Q9Y219 1238 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 SNCAIPQ9Y6H5 919 aa7.46□□□□□ -1.22
VPS53-208ENST00000570650 ARAP2Q8WZ64 1704 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 PI4KAP2A4QPH2 592 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 NEURL1BA8MQ27 555 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 H7C1W4 665 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 ELL2O00472 640 aaPredicted RBP7.45□□□□□ -1.22
VPS53-208ENST00000570650 TAF5LO75529 589 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 FCGRTP55899 365 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 PRKCZQ05513 592 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 CWF19L2Q2TBE0 894 aaKnown RBP7.45□□□□□ -1.22
VPS53-208ENST00000570650 MFSD14BQ5SR56 506 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 CCDC30Q5VVM6 783 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 Q7L0L9 218 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 ANKRD23Q86SG2 305 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 BPHLQ86WA6 291 aaPredicted RBP7.45□□□□□ -1.22
VPS53-208ENST00000570650 DZIP1LQ8IYY4 767 aaKnown RBP7.45□□□□□ -1.22
VPS53-208ENST00000570650 PI4KAP1Q8N8J0 262 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 RUNDC1Q96C34 613 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 C1QTNF2Q9BXJ5 285 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 MTMR10Q9NXD2 777 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 ADGRA2Q96PE1 1338 aa7.45□□□□□ -1.22
VPS53-208ENST00000570650 LAMA3Q16787 3333 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 A0A0C4DFX4 3053 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 MAGEB6P1A0A0J9YX57 407 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 ANKRD18BA2A2Z9 1011 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 PDHXO00330 501 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 ST8SIA5O15466 376 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 AVPP01185 164 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 TFRCP02786 760 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms