RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RNPC3Q96LT9 517 aaKnown RBP13.74□□□□□ -0.21
VPS53-207ENST00000570510 PTPRFP10586 1907 aa13.74□□□□□ -0.21
VPS53-207ENST00000570510 MROH7-TTC4A0A0A0MT08 1334 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 USP17L10C9JJH3 530 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 LDHCP07864 332 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 ASNSP08243 561 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 PHKA1P46020 1223 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 Q3C1V9 767 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 GJC2Q5T442 439 aaPredicted RBP13.73□□□□□ -0.21
VPS53-207ENST00000570510 ERICH6Q7L0X2 663 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 WDR63Q8IWG1 891 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 USP6NLQ92738 828 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 FAM163AQ96GL9 167 aaPredicted RBP13.73□□□□□ -0.21
VPS53-207ENST00000570510 NOL10Q9BSC4 688 aaKnown RBP13.73□□□□□ -0.21
VPS53-207ENST00000570510 PORCNQ9H237 461 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 RBPJLQ9UBG7 517 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 HERC5Q9UII4 1024 aaKnown RBP13.73□□□□□ -0.21
VPS53-207ENST00000570510 NDUFB9Q9Y6M9 179 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 TTC28Q96AY4 2481 aa13.73□□□□□ -0.21
VPS53-207ENST00000570510 MYH13Q9UKX3 1938 aa13.72□□□□□ -0.21
VPS53-207ENST00000570510 GSTO1P78417 241 aa13.72□□□□□ -0.21
VPS53-207ENST00000570510 SLC39A5Q6ZMH5 540 aa13.72□□□□□ -0.21
VPS53-207ENST00000570510 CRACR2BQ8N4Y2 399 aaPredicted RBP13.72□□□□□ -0.21
VPS53-207ENST00000570510 GAS2L1Q99501 681 aaPredicted RBP13.72□□□□□ -0.21
VPS53-207ENST00000570510 WDR18Q9BV38 432 aa13.72□□□□□ -0.21
VPS53-207ENST00000570510 GPR75-ASB3A0A0A6YYF3 556 aa13.71□□□□□ -0.21
VPS53-207ENST00000570510 NPM3O75607 178 aaKnown RBP13.71□□□□□ -0.21
VPS53-207ENST00000570510 MAP4K4O95819 1239 aaPredicted RBP13.71□□□□□ -0.21
VPS53-207ENST00000570510 MECOMQ03112 1051 aa13.71□□□□□ -0.21
VPS53-207ENST00000570510 CCDC102BQ68D86 513 aa13.71□□□□□ -0.21
VPS53-207ENST00000570510 ATXN2LQ8WWM7 1075 aaKnown RBP13.71□□□□□ -0.21
VPS53-207ENST00000570510 PI4KBQ9UBF8 816 aa13.71□□□□□ -0.21
VPS53-207ENST00000570510 PHIPQ8WWQ0 1821 aa13.71□□□□□ -0.22
VPS53-207ENST00000570510 RFX7Q2KHR2 1363 aa13.71□□□□□ -0.22
VPS53-207ENST00000570510 DNAH12Q6ZR08 3092 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 SLC15A5A6NIM6 579 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 CYP2C19P33261 490 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 MAP3K12Q12852 859 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 GRIN2CQ14957 1233 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 TRIM60Q495X7 471 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 ATG9AQ7Z3C6 839 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 TEX11Q8IYF3 940 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 FBXO3Q9UK99 471 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 RABGAP1Q9Y3P9 1069 aa13.7□□□□□ -0.22
VPS53-207ENST00000570510 MYH2Q9UKX2 1941 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.69□□□□□ -0.22
VPS53-207ENST00000570510 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.69□□□□□ -0.22
VPS53-207ENST00000570510 RHBDL3P58872 404 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 RASGRF1Q13972 1273 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 DPP9Q86TI2 863 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 USP38Q8NB14 1042 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 ADAMTS19Q8TE59 1207 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 UHRF1Q96T88 793 aaPredicted RBP13.69□□□□□ -0.22
VPS53-207ENST00000570510 FEZ1Q99689 392 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 DHX36Q9H2U1 1008 aaKnown RBP13.69□□□□□ -0.22
VPS53-207ENST00000570510 ZNF576Q9H609 170 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 FLRT1Q9NZU1 646 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 RAI14Q9P0K7 980 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 TACC3Q9Y6A5 838 aa13.69□□□□□ -0.22
VPS53-207ENST00000570510 LOC285556D6RIA3 1793 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 CIAO1O76071 339 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 RAG1P15918 1043 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 DNAJB2P25686 324 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 IL15P40933 162 aaPredicted RBP13.68□□□□□ -0.22
VPS53-207ENST00000570510 ADCYAP1R1P41586 468 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 MRPS5P82675 430 aaKnown RBP13.68□□□□□ -0.22
VPS53-207ENST00000570510 GORABQ5T7V8 394 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 ANO1Q5XXA6 986 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 USP17L2Q6R6M4 530 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 FERMT2Q96AC1 680 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 ASB2Q96Q27 587 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 USP44Q9H0E7 712 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 PDLIM7Q9NR12 457 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 THEGQ9P2T0 379 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 PLXNB2O15031 1838 aa13.68□□□□□ -0.22
VPS53-207ENST00000570510 CDH23Q9H251 3354 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 TRIM43BA6NCK2 446 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 USP17L15C9J2P7 530 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 USP17L13C9JLJ4 530 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 USP17L11C9JVI0 530 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 USP17L18D6R9N7 530 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 USP17L22D6RA61 530 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 USP17L17D6RBQ6 530 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 USP17L19D6RCP7 530 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 USP17L20D6RJB6 530 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 GDF11O95390 407 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 PTPREP23469 700 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 ADORA1P30542 326 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 RFX5P48382 616 aaPredicted RBP13.67□□□□□ -0.22
VPS53-207ENST00000570510 USP17L24Q0WX57 530 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 RRP1BQ14684 758 aaKnown RBP13.67□□□□□ -0.22
VPS53-207ENST00000570510 ZYXQ15942 572 aaKnown RBP13.67□□□□□ -0.22
VPS53-207ENST00000570510 CCDC129Q6ZRS4 1044 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 SH3RF1Q7Z6J0 888 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 TRIM43Q96BQ3 446 aaPredicted RBP13.67□□□□□ -0.22
VPS53-207ENST00000570510 TIFAQ96CG3 184 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 C1QTNF1Q9BXJ1 281 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 GINM1Q9NU53 330 aa13.67□□□□□ -0.22
VPS53-207ENST00000570510 PDS5AQ29RF7 1337 aaKnown RBP13.66□□□□□ -0.22
VPS53-207ENST00000570510 MUC3AQ02505 3323 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms