RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 EPB41L2O43491 1005 aaKnown RBP11.06□□□□□ -0.64
VPS35-211ENST00000569950 PRDM1O75626 825 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 HLA-DOAP06340 250 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 AKR1B1P15121 316 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 HSPA4P34932 840 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 CAP2P40123 477 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 C1QTNF8P60827 252 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 HTRA3P83110 453 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 TSGA10IPQ3SY00 556 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 CLEC10AQ8IUN9 316 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 WRNIP1Q96S55 665 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 BACH2Q9BYV9 841 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS35-211ENST00000569950 TAOK2Q9UL54 1235 aa11.06□□□□□ -0.64
VPS35-211ENST00000569950 ANGEL1Q9UNK9 670 aaKnown RBP11.06□□□□□ -0.64
VPS35-211ENST00000569950 TMEM88BA6NKF7 163 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 GDF11O95390 407 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 NOVP48745 357 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 MAP3K9P80192 1104 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 ADCK5Q3MIX3 580 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 AKNAD1Q5T1N1 836 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 DCAF15Q66K64 600 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 STK11IPQ8N1F8 1099 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 IL17RBQ9NRM6 502 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 SWAP70Q9UH65 585 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 ZBTB21Q9ULJ3 1066 aa11.05□□□□□ -0.64
VPS35-211ENST00000569950 RASSF10A6NK89 507 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 E7EWF7 191 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 PPP1R12BO60237 982 aaPredicted RBP11.04□□□□□ -0.64
VPS35-211ENST00000569950 CTNND1O60716 968 aaKnown RBP11.04□□□□□ -0.64
VPS35-211ENST00000569950 ANTXR2P58335 489 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 MOGSQ13724 837 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 RCSD1Q6JBY9 416 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 CASC1Q6TDU7 716 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 CYB5R4Q7L1T6 521 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 MB21D2Q8IYB1 491 aaPredicted RBP11.04□□□□□ -0.64
VPS35-211ENST00000569950 SCYL3Q8IZE3 742 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 ZIC5Q96T25 663 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 KIF2CQ99661 725 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 CREBZFQ9NS37 354 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 CTNNA3Q9UI47 895 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 SNX14Q9Y5W7 946 aa11.04□□□□□ -0.64
VPS35-211ENST00000569950 A0A1W2PRG0 241 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 SPDYE5A6NIY4 337 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 UNCXA6NJT0 531 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 ZNF213O14771 459 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 NMT2O60551 498 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 REC8O95072 547 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 GH2P01242 217 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 PTPRAP18433 802 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 NF2P35240 595 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 IREB2P48200 963 aaKnown RBP11.03□□□□□ -0.64
VPS35-211ENST00000569950 HUNKP57058 714 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 IMMTQ16891 758 aaKnown RBP11.03□□□□□ -0.64
VPS35-211ENST00000569950 KIAA1211Q6ZU35 1233 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 RASAL3Q86YV0 1011 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 ANKRD13AQ8IZ07 590 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 CRACR2BQ8N4Y2 399 aaPredicted RBP11.03□□□□□ -0.64
VPS35-211ENST00000569950 C2orf69Q8N8R5 385 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 NEDD1Q8NHV4 660 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 HOOK2Q96ED9 719 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 DDRGK1Q96HY6 314 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 HHIPL1Q96JK4 782 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 ELP3Q9H9T3 547 aa11.03□□□□□ -0.64
VPS35-211ENST00000569950 B4E1Z4 1266 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 HSPA6P17066 643 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 DGKZQ13574 1117 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 SEPT2Q15019 361 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 ABCB5Q2M3G0 1257 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 CERKLQ49MI3 558 aaPredicted RBP11.02□□□□□ -0.65
VPS35-211ENST00000569950 FAM47AQ5JRC9 791 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 KIAA1755Q5JYT7 1200 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 ARMC9Q7Z3E5 817 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 WNK4Q96J92 1243 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 MS4A4AQ96JQ5 239 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 SENP2Q9HC62 589 aa11.02□□□□□ -0.65
VPS35-211ENST00000569950 KDM4AO75164 1064 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 SLC10A3P09131 477 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 PCP11498 1178 aaKnown RBP11.01□□□□□ -0.65
VPS35-211ENST00000569950 TFAP4Q01664 338 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 EXOSC10Q01780 885 aaKnown RBP11.01□□□□□ -0.65
VPS35-211ENST00000569950 PDE4BQ07343 736 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 TTLL12Q14166 644 aaPredicted RBP11.01□□□□□ -0.65
VPS35-211ENST00000569950 SEC23AQ15436 765 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 SPRYD7Q5W111 196 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 MFSD6Q6ZSS7 791 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 DNAJC5GQ8N7S2 189 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 ACER1Q8TDN7 264 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 CCDC17Q96LX7 622 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 GPHNQ9NQX3 736 aaPredicted RBP11.01□□□□□ -0.65
VPS35-211ENST00000569950 TCP11L1Q9NUJ3 509 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 ZSWIM5Q9P217 1185 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 KCNH4Q9UQ05 1017 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 AFG3L2Q9Y4W6 797 aa11.01□□□□□ -0.65
VPS35-211ENST00000569950 IRF6O14896 467 aa11□□□□□ -0.65
VPS35-211ENST00000569950 ASNSP08243 561 aa11□□□□□ -0.65
VPS35-211ENST00000569950 CPA1P15085 419 aa11□□□□□ -0.65
VPS35-211ENST00000569950 ECE1P42892 770 aa11□□□□□ -0.65
VPS35-211ENST00000569950 RBM25P49756 843 aaKnown RBP11□□□□□ -0.65
VPS35-211ENST00000569950 PPIL2Q13356 520 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms