RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 EPHA10Q5JZY3 1008 aa14.21□□□□□ -0.13
CDH3-208ENST00000569036 ZSCAN29Q8IWY8 852 aaPredicted RBP14.21□□□□□ -0.13
CDH3-208ENST00000569036 MICALL1Q8N3F8 863 aa14.21□□□□□ -0.13
CDH3-208ENST00000569036 LINS1Q8NG48 757 aa14.21□□□□□ -0.13
CDH3-208ENST00000569036 CHMP4AQ9BY43 222 aa14.21□□□□□ -0.13
CDH3-208ENST00000569036 ERC2O15083 957 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 ENTPD3O75355 529 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 ADCYAP1R1P41586 468 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 ERVK-9P63128 1117 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 ERVK-24P63145 666 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 Q3C1V9 767 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 SH3D19Q5HYK7 790 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 CCAR1Q8IX12 1150 aaKnown RBP14.2□□□□□ -0.14
CDH3-208ENST00000569036 FERMT2Q96AC1 680 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.2□□□□□ -0.14
CDH3-208ENST00000569036 IDI2Q9BXS1 227 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 IFT57Q9NWB7 429 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 RBPJLQ9UBG7 517 aa14.2□□□□□ -0.14
CDH3-208ENST00000569036 PRR33A8MZF0 331 aa14.19□□□□□ -0.14
CDH3-208ENST00000569036 CYP2C19P33261 490 aa14.19□□□□□ -0.14
CDH3-208ENST00000569036 TSPYL6Q8N831 410 aa14.19□□□□□ -0.14
CDH3-208ENST00000569036 EDC3Q96F86 508 aaKnown RBP14.19□□□□□ -0.14
CDH3-208ENST00000569036 ZDBF2Q9HCK1 2354 aa14.19□□□□□ -0.14
CDH3-208ENST00000569036 MROH5Q6ZUA9 1318 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 PRRC2BQ5JSZ5 2229 aaKnown RBP14.18□□□□□ -0.14
CDH3-208ENST00000569036 MYH2Q9UKX2 1941 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 PI4K2BG5E9Z4 385 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 TLL1O43897 1013 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 MYCNP04198 464 aaPredicted RBP14.18□□□□□ -0.14
CDH3-208ENST00000569036 CYBAP13498 195 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 HOXA7P31268 230 aaPredicted RBP14.18□□□□□ -0.14
CDH3-208ENST00000569036 GNAI1P63096 354 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 ANO1Q5XXA6 986 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 DNAAF4Q8WXU2 420 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 RUNDC1Q96C34 613 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 STK31Q9BXU1 1019 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 TBC1D2Q9BYX2 928 aa14.18□□□□□ -0.14
CDH3-208ENST00000569036 FAM196BA6NMK8 535 aa14.17□□□□□ -0.14
CDH3-208ENST00000569036 PRDX5P30044 214 aa14.17□□□□□ -0.14
CDH3-208ENST00000569036 ATP2B2Q01814 1243 aa14.17□□□□□ -0.14
CDH3-208ENST00000569036 SKIV2LQ15477 1246 aaKnown RBP14.17□□□□□ -0.14
CDH3-208ENST00000569036 RASIP1Q5U651 963 aa14.17□□□□□ -0.14
CDH3-208ENST00000569036 WDR66Q8TBY9 1149 aa14.17□□□□□ -0.14
CDH3-208ENST00000569036 PAGR1Q9BTK6 254 aa14.17□□□□□ -0.14
CDH3-208ENST00000569036 OSBPL5Q9H0X9 879 aaPredicted RBP14.17□□□□□ -0.14
CDH3-208ENST00000569036 NKX2-4Q9H2Z4 354 aa14.17□□□□□ -0.14
CDH3-208ENST00000569036 CWC22Q9HCG8 908 aaKnown RBP14.17□□□□□ -0.14
CDH3-208ENST00000569036 DDX4Q9NQI0 724 aaKnown RBP14.17□□□□□ -0.14
CDH3-208ENST00000569036 NDUFB9Q9Y6M9 179 aa14.17□□□□□ -0.14
CDH3-208ENST00000569036 IGHA2P01877 340 aa14.16□□□□□ -0.14
CDH3-208ENST00000569036 LRRC41Q15345 812 aa14.16□□□□□ -0.14
CDH3-208ENST00000569036 RAB30Q15771 203 aa14.16□□□□□ -0.14
CDH3-208ENST00000569036 HERVK_113Q902F9 699 aa14.16□□□□□ -0.14
CDH3-208ENST00000569036 FBXL18Q96ME1 805 aa14.16□□□□□ -0.14
CDH3-208ENST00000569036 TMEM39AQ9NV64 488 aa14.16□□□□□ -0.14
CDH3-208ENST00000569036 MSRAQ9UJ68 235 aa14.16□□□□□ -0.14
CDH3-208ENST00000569036 USP17L5A8MUK1 530 aa14.15□□□□□ -0.14
CDH3-208ENST00000569036 TBC1D12O60347 775 aa14.15□□□□□ -0.14
CDH3-208ENST00000569036 PQBP1O60828 265 aaKnown RBP14.15□□□□□ -0.14
CDH3-208ENST00000569036 HOXC6P09630 235 aa14.15□□□□□ -0.14
CDH3-208ENST00000569036 MTMR2Q13614 643 aa14.15□□□□□ -0.14
CDH3-208ENST00000569036 TMEM240Q5SV17 173 aa14.15□□□□□ -0.14
CDH3-208ENST00000569036 C16orf59Q7L2K0 433 aa14.15□□□□□ -0.14
CDH3-208ENST00000569036 VGLL2Q8N8G2 317 aa14.15□□□□□ -0.14
CDH3-208ENST00000569036 NPLOC4Q8TAT6 608 aa14.15□□□□□ -0.14
CDH3-208ENST00000569036 CD320Q9NPF0 282 aa14.15□□□□□ -0.14
CDH3-208ENST00000569036 SLC15A5A6NIM6 579 aa14.14□□□□□ -0.15
CDH3-208ENST00000569036 GLRX3O76003 335 aaKnown RBP14.14□□□□□ -0.15
CDH3-208ENST00000569036 FLIIQ13045 1269 aa14.14□□□□□ -0.15
CDH3-208ENST00000569036 RRP1BQ14684 758 aaKnown RBP14.14□□□□□ -0.15
CDH3-208ENST00000569036 METTL24Q5JXM2 366 aa14.14□□□□□ -0.15
CDH3-208ENST00000569036 SLC28A3Q9HAS3 691 aa14.14□□□□□ -0.15
CDH3-208ENST00000569036 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.14□□□□□ -0.15
CDH3-208ENST00000569036 PHF24Q9UPV7 400 aa14.14□□□□□ -0.15
CDH3-208ENST00000569036 YBX2Q9Y2T7 364 aaKnown RBP14.14□□□□□ -0.15
CDH3-208ENST00000569036 KIF16BQ96L93 1317 aa14.14□□□□□ -0.15
CDH3-208ENST00000569036 C5orf42Q9H799 3197 aa14.14□□□□□ -0.15
CDH3-208ENST00000569036 ZNF318Q5VUA4 2279 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 SEPT4O43236 478 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 SLC4A2P04920 1241 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 PTPREP23469 700 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 FKBP5Q13451 457 aaPredicted RBP14.13□□□□□ -0.15
CDH3-208ENST00000569036 PICALMQ13492 652 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 SLC44A5Q8NCS7 719 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 GTF3C2Q8WUA4 911 aaPredicted RBP14.13□□□□□ -0.15
CDH3-208ENST00000569036 UIMC1Q96RL1 719 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 KCNH6Q9H252 994 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 AS3MTQ9HBK9 375 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 TMOD4Q9NZQ9 345 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 COG5Q9UP83 839 aa14.13□□□□□ -0.15
CDH3-208ENST00000569036 BRWD1Q9NSI6 2320 aa14.12□□□□□ -0.15
CDH3-208ENST00000569036 CNMDO75829 334 aa14.12□□□□□ -0.15
CDH3-208ENST00000569036 PDE8BO95263 885 aa14.12□□□□□ -0.15
CDH3-208ENST00000569036 TIMP1P01033 207 aa14.12□□□□□ -0.15
CDH3-208ENST00000569036 LDHBP07195 334 aaKnown RBP14.12□□□□□ -0.15
CDH3-208ENST00000569036 CAP2P40123 477 aa14.12□□□□□ -0.15
CDH3-208ENST00000569036 BACE1P56817 501 aa14.12□□□□□ -0.15
CDH3-208ENST00000569036 FOXK2Q01167 660 aa14.12□□□□□ -0.15
CDH3-208ENST00000569036 FAAP100Q0VG06 881 aa14.12□□□□□ -0.15
CDH3-208ENST00000569036 GRB14Q14449 540 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms