RNA–Protein interactions for RNA: ENST00000568782.1

UBR1-207, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 615 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-207	ENST00000568782	EDC3	Q96F86	508 aa	Known RBP	12.48	□□□□□ -0.41
UBR1-207	ENST00000568782	FEZ1	Q99689	392 aa		12.48	□□□□□ -0.41
UBR1-207	ENST00000568782	RIOK1	Q9BRS2	568 aa	Known RBP	12.48	□□□□□ -0.41
UBR1-207	ENST00000568782	WDR18	Q9BV38	432 aa		12.48	□□□□□ -0.41
UBR1-207	ENST00000568782	RWDD1	Q9H446	243 aa	Predicted RBP	12.48	□□□□□ -0.41
UBR1-207	ENST00000568782	BAZ2A	Q9UIF9	1905 aa	Known RBP	12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	MGAM	O43451	1857 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	MPHOSPH10	O00566	681 aa	Known RBP	12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	MBD4	O95243	580 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	CYP2C8	P10632	490 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	PSMC4	P43686	418 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	GCLC	P48506	637 aa	Predicted RBP	12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	HMGCS2	P54868	508 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	FCGRT	P55899	365 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	BACE1	P56817	501 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	IRX3	P78415	501 aa	Predicted RBP	12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	RAB3GAP1	Q15042	981 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	ABCB5	Q2M3G0	1257 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	GPAT2	Q6NUI2	795 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	TMEM106C	Q9BVX2	250 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	ARMT1	Q9H993	441 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	SWAP70	Q9UH65	585 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	ZBTB21	Q9ULJ3	1066 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	SLC4A4	Q9Y6R1	1079 aa		12.47	□□□□□ -0.41
UBR1-207	ENST00000568782	SIPA1L1	O43166	1804 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	TCRBV5S4A2T	A0A5A2	114 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	ECM2	O94769	699 aa	Predicted RBP	12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	GH2	P01242	217 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	MX1	P20591	662 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	USP14	P54578	494 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	SOX10	P56693	466 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	MTMR2	Q13614	643 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	USP17L2	Q6R6M4	530 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	CCDC84	Q86UT8	332 aa	Predicted RBP	12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	CCAR1	Q8IX12	1150 aa	Known RBP	12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	LCORL	Q8N3X6	602 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	KBTBD3	Q8NAB2	608 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	RAET1E	Q8TD07	263 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	SDR42E1	Q8WUS8	393 aa		12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	DCP1A	Q9NPI6	582 aa	Predicted RBP	12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	12.46	□□□□□ -0.41
UBR1-207	ENST00000568782	GNAT2	P19087	354 aa		12.45	□□□□□ -0.42
UBR1-207	ENST00000568782	RGS19	P49795	217 aa		12.45	□□□□□ -0.42
UBR1-207	ENST00000568782	HDAC1	Q13547	482 aa	Predicted RBP	12.45	□□□□□ -0.42
UBR1-207	ENST00000568782	MOGS	Q13724	837 aa		12.45	□□□□□ -0.42
UBR1-207	ENST00000568782	SH3D19	Q5HYK7	790 aa		12.45	□□□□□ -0.42
UBR1-207	ENST00000568782	TATDN1	Q6P1N9	297 aa		12.45	□□□□□ -0.42
UBR1-207	ENST00000568782	COA7	Q96BR5	231 aa		12.45	□□□□□ -0.42
UBR1-207	ENST00000568782	LOC285556	D6RIA3	1793 aa		12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	RNF113A	O15541	343 aa	Known RBP	12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	APP	P05067	770 aa		12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	PLCD1	P51178	756 aa		12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	GTF3C2	Q8WUA4	911 aa	Predicted RBP	12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	APPBP2	Q92624	585 aa		12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	TRIM47	Q96LD4	638 aa		12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	FSD1	Q9BTV5	496 aa		12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	DNAJC18	Q9H819	358 aa		12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	ZNF287	Q9HBT7	754 aa		12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	BIN2	Q9UBW5	565 aa	Predicted RBP	12.44	□□□□□ -0.42
UBR1-207	ENST00000568782	MYPN	Q86TC9	1320 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	TNPO2	O14787	897 aa	Known RBP	12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	BCR	P11274	1271 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	RRP1B	Q14684	758 aa	Known RBP	12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	FAM110C	Q1W6H9	321 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	TREML2	Q5T2D2	321 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	TSHZ3	Q63HK5	1081 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	ANKRD13C	Q8N6S4	541 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	CCDC17	Q96LX7	622 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	NACAP1	Q9BZK3	213 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	ASCC2	Q9H1I8	757 aa	Predicted RBP	12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	SH2D4A	Q9H788	454 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	CWC22	Q9HCG8	908 aa	Known RBP	12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	ARPP21	Q9UBL0	812 aa	Predicted RBP	12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	SRRD	Q9UH36	339 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	SUPT16H	Q9Y5B9	1047 aa	Known RBP	12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	PTCH2	Q9Y6C5	1203 aa		12.43	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L12	C9JPN9	530 aa		12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L21	D6R901	530 aa		12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	PRKAB2	O43741	272 aa		12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	HOXA7	P31268	230 aa	Predicted RBP	12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	UBXN2A	P68543	259 aa		12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	ZYX	Q15942	572 aa	Known RBP	12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	GIMAP6	Q6P9H5	292 aa		12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	TMEM179	Q6ZVK1	233 aa		12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	ARHGAP39	Q9C0H5	1083 aa		12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	PUS7L	Q9H0K6	701 aa	Known RBP	12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	MKNK2	Q9HBH9	465 aa		12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	ARHGEF10L	Q9HCE6	1279 aa		12.42	□□□□□ -0.42
UBR1-207	ENST00000568782	ADGRA2	Q96PE1	1338 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	MINDY4B	A8MYZ0	360 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L15	C9J2P7	530 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L13	C9JLJ4	530 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L11	C9JVI0	530 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L18	D6R9N7	530 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L22	D6RA61	530 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L17	D6RBQ6	530 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L19	D6RCP7	530 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	USP17L20	D6RJB6	530 aa		12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	SLC3A2	P08195	630 aa	Known RBP	12.41	□□□□□ -0.42
UBR1-207	ENST00000568782	SHMT1	P34896	483 aa		12.41	□□□□□ -0.42

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