RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 NSUN5Q96P11 429 aaKnown RBP7.79□□□□□ -1.16
VPS39-209ENST00000568029 BHLHE41Q9C0J9 482 aaPredicted RBP7.79□□□□□ -1.16
VPS39-209ENST00000568029 C14orf93Q9H972 538 aaKnown RBP7.79□□□□□ -1.16
VPS39-209ENST00000568029 PANK3Q9H999 370 aa7.79□□□□□ -1.16
VPS39-209ENST00000568029 POGKQ9P215 609 aa7.79□□□□□ -1.16
VPS39-209ENST00000568029 FAM8A1Q9UBU6 413 aa7.79□□□□□ -1.16
VPS39-209ENST00000568029 THRAP3Q9Y2W1 955 aaKnown RBP7.79□□□□□ -1.16
VPS39-209ENST00000568029 TNS2Q63HR2 1409 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 ABCC6O95255 1503 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 NFKBIEO00221 500 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 GADD45BO75293 160 aaPredicted RBP7.78□□□□□ -1.16
VPS39-209ENST00000568029 GHRHP01286 108 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 EPXP11678 715 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 XRCC5P13010 732 aaKnown RBP7.78□□□□□ -1.16
VPS39-209ENST00000568029 PRELPP51888 382 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 GRM2Q14416 872 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 ERICH6BQ5W0A0 696 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 KANK3Q6NY19 840 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 CCNJLQ8IV13 435 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 CACTIN-AS1Q8N1I8 211 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 CRELD1Q96HD1 420 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 CNTNAP3BQ96NU0 1288 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 OSMRQ99650 979 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 ZKSCAN3Q9BRR0 538 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 PBX4Q9BYU1 374 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 BCO2Q9BYV7 579 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 CNTNAP3Q9BZ76 1288 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 OSBPL7Q9BZF2 842 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 ZFYVE1Q9HBF4 777 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 PPP4R2Q9NY27 417 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 KNSTRNQ9Y448 316 aa7.78□□□□□ -1.16
VPS39-209ENST00000568029 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.78□□□□□ -1.16
VPS39-209ENST00000568029 POLR3AO14802 1390 aaPredicted RBP7.77□□□□□ -1.17
VPS39-209ENST00000568029 ALAS2P22557 587 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 PTPN12Q05209 780 aaKnown RBP7.77□□□□□ -1.17
VPS39-209ENST00000568029 PI16Q6UXB8 463 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 FAM35AQ86V20 835 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 GLIS3Q8NEA6 775 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 ACDQ96AP0 544 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 TCF12Q99081 682 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 EHD4Q9H223 541 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 LATS2Q9NRM7 1088 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 IGSF5Q9NSI5 407 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 DOT1LQ8TEK3 1739 aa7.77□□□□□ -1.17
VPS39-209ENST00000568029 LY75O60449 1722 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 TOGARAM1Q9Y4F4 1720 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 RECKO95980 971 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 GSTT1P30711 240 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 MSL1Q68DK7 614 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 NXPE3Q969Y0 559 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 IGFLR1Q9H665 355 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 LIN7BQ9HAP6 207 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 RNF19AQ9NV58 838 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 STK17AQ9UEE5 414 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 VTI1BQ9UEU0 232 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 NAGPAQ9UK23 515 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 CICQ96RK0 1608 aaPredicted RBP7.76□□□□□ -1.17
VPS39-209ENST00000568029 ACEP12821 1306 aa7.76□□□□□ -1.17
VPS39-209ENST00000568029 KIAA1551Q9HCM1 1747 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 J3QW42 95 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 PDE2AO00408 941 aaPredicted RBP7.75□□□□□ -1.17
VPS39-209ENST00000568029 OIP5O43482 229 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 WIPF1O43516 503 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 SMNDC1O75940 238 aaKnown RBP eCLIP7.75□□□□□ -1.17
VPS39-209ENST00000568029 GCP02774 474 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 EIF2AK2P19525 551 aaKnown RBP7.75□□□□□ -1.17
VPS39-209ENST00000568029 ST13P50502 369 aaKnown RBP7.75□□□□□ -1.17
VPS39-209ENST00000568029 INSM1Q01101 510 aaPredicted RBP7.75□□□□□ -1.17
VPS39-209ENST00000568029 MLLT1Q03111 559 aaPredicted RBP7.75□□□□□ -1.17
VPS39-209ENST00000568029 TBC1D8BQ0IIM8 1120 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 PERM1Q5SV97 790 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 LCE2CQ5TA81 110 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 NXPE4Q6UWF7 544 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 TOM1L2Q6ZVM7 507 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 PLD4Q96BZ4 506 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 FAM161BQ96MY7 647 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 PPM1HQ9ULR3 514 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 USP54Q70EL1 1684 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 KIAA1210Q9ULL0 1709 aa7.75□□□□□ -1.17
VPS39-209ENST00000568029 TMEM238LA0A1B0GVL6 79 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 BCRP11274 1271 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 CPB1P15086 417 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 ITPKAP23677 461 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 GMPRP36959 345 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 CC2D1BQ5T0F9 858 aaKnown RBP7.74□□□□□ -1.17
VPS39-209ENST00000568029 LDLRAD1Q5T700 205 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 ELMSAN1Q6PJG2 1045 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 LPIN3Q9BQK8 851 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 BACH2Q9BYV9 841 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 RASSF4Q9H2L5 321 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 ABCB6Q9NP58 842 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 PRDM6Q9NQX0 595 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 METTL5Q9NRN9 209 aaKnown RBP7.74□□□□□ -1.17
VPS39-209ENST00000568029 USP6P35125 1406 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 CPSF1Q10570 1443 aaKnown RBP7.74□□□□□ -1.17
VPS39-209ENST00000568029 WDR17Q8IZU2 1322 aa7.74□□□□□ -1.17
VPS39-209ENST00000568029 CENPJQ9HC77 1338 aaPredicted RBP7.74□□□□□ -1.17
VPS39-209ENST00000568029 INSRP06213 1382 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 PPIP5K1Q6PFW1 1433 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 CTSHP09668 335 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms