RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 MFSD14CQ5VZR4 134 aa20.87■□□□□ 0.93
CLK3-217ENST00000566126 TRPV1Q8NER1 839 aa20.87■□□□□ 0.93
CLK3-217ENST00000566126 KLHDC4Q8TBB5 520 aa20.87■□□□□ 0.93
CLK3-217ENST00000566126 LRFN3Q9BTN0 628 aa20.87■□□□□ 0.93
CLK3-217ENST00000566126 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.87■□□□□ 0.93
CLK3-217ENST00000566126 HCN4Q9Y3Q4 1203 aa20.87■□□□□ 0.93
CLK3-217ENST00000566126 SALL1Q9NSC2 1324 aa20.86■□□□□ 0.93
CLK3-217ENST00000566126 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.86■□□□□ 0.93
CLK3-217ENST00000566126 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.86■□□□□ 0.93
CLK3-217ENST00000566126 USP17L5A8MUK1 530 aa20.86■□□□□ 0.93
CLK3-217ENST00000566126 EDC3Q96F86 508 aaKnown RBP20.86■□□□□ 0.93
CLK3-217ENST00000566126 GAS2L1Q99501 681 aaPredicted RBP20.86■□□□□ 0.93
CLK3-217ENST00000566126 BICC1Q9H694 974 aaKnown RBP20.86■□□□□ 0.93
CLK3-217ENST00000566126 MUC6Q6W4X9 2439 aa20.85■□□□□ 0.93
CLK3-217ENST00000566126 ALDH1L1O75891 902 aa20.85■□□□□ 0.93
CLK3-217ENST00000566126 NBPF7P0C2Y1 421 aaPredicted RBP20.85■□□□□ 0.93
CLK3-217ENST00000566126 CAP2P40123 477 aa20.85■□□□□ 0.93
CLK3-217ENST00000566126 MTMR2Q13614 643 aa20.85■□□□□ 0.93
CLK3-217ENST00000566126 ANKRD44Q8N8A2 993 aa20.85■□□□□ 0.93
CLK3-217ENST00000566126 TIFAQ96CG3 184 aa20.85■□□□□ 0.93
CLK3-217ENST00000566126 PLXNA1Q9UIW2 1896 aa20.85■□□□□ 0.93
CLK3-217ENST00000566126 CCAR1Q8IX12 1150 aaKnown RBP20.84■□□□□ 0.93
CLK3-217ENST00000566126 CHD7Q9P2D1 2997 aa20.84■□□□□ 0.93
CLK3-217ENST00000566126 SLC5A1P13866 664 aa20.83■□□□□ 0.93
CLK3-217ENST00000566126 BACE1P56817 501 aa20.83■□□□□ 0.93
CLK3-217ENST00000566126 ADGRE1Q14246 886 aa20.83■□□□□ 0.93
CLK3-217ENST00000566126 CCDC85BQ15834 202 aaPredicted RBP20.83■□□□□ 0.93
CLK3-217ENST00000566126 IL27Q8NEV9 243 aa20.83■□□□□ 0.93
CLK3-217ENST00000566126 LPIN2Q92539 896 aa20.83■□□□□ 0.93
CLK3-217ENST00000566126 PAGR1Q9BTK6 254 aa20.83■□□□□ 0.93
CLK3-217ENST00000566126 WDR18Q9BV38 432 aa20.83■□□□□ 0.93
CLK3-217ENST00000566126 PRDM12Q9H4Q4 367 aa20.83■□□□□ 0.93
CLK3-217ENST00000566126 AS3MTQ9HBK9 375 aa20.83■□□□□ 0.93
CLK3-217ENST00000566126 VAMP4O75379 141 aa20.82■□□□□ 0.92
CLK3-217ENST00000566126 IGHA2P01877 340 aa20.82■□□□□ 0.92
CLK3-217ENST00000566126 BMP1P13497 986 aa20.82■□□□□ 0.92
CLK3-217ENST00000566126 CYP2C19P33261 490 aa20.82■□□□□ 0.92
CLK3-217ENST00000566126 TLE2Q04725 743 aa20.82■□□□□ 0.92
CLK3-217ENST00000566126 C1orf53Q5VUE5 145 aa20.82■□□□□ 0.92
CLK3-217ENST00000566126 ARRDC4Q8NCT1 418 aa20.82■□□□□ 0.92
CLK3-217ENST00000566126 EPHX3Q9H6B9 360 aa20.82■□□□□ 0.92
CLK3-217ENST00000566126 NDUFB9Q9Y6M9 179 aa20.82■□□□□ 0.92
CLK3-217ENST00000566126 KBTBD13C9JR72 458 aa20.81■□□□□ 0.92
CLK3-217ENST00000566126 CYBAP13498 195 aa20.81■□□□□ 0.92
CLK3-217ENST00000566126 BTDP43251 543 aa20.81■□□□□ 0.92
CLK3-217ENST00000566126 ALYREFQ86V81 257 aaKnown RBP20.81■□□□□ 0.92
CLK3-217ENST00000566126 NPLOC4Q8TAT6 608 aa20.81■□□□□ 0.92
CLK3-217ENST00000566126 FAM163AQ96GL9 167 aaPredicted RBP20.81■□□□□ 0.92
CLK3-217ENST00000566126 SNX27Q96L92 541 aa20.81■□□□□ 0.92
CLK3-217ENST00000566126 TMOD4Q9NZQ9 345 aa20.81■□□□□ 0.92
CLK3-217ENST00000566126 ADCYAP1R1P41586 468 aa20.8■□□□□ 0.92
CLK3-217ENST00000566126 RHBDL3P58872 404 aa20.8■□□□□ 0.92
CLK3-217ENST00000566126 ATP2B2Q01814 1243 aa20.8■□□□□ 0.92
CLK3-217ENST00000566126 ANO1Q5XXA6 986 aa20.8■□□□□ 0.92
CLK3-217ENST00000566126 SRCIN1Q9C0H9 1055 aa20.8■□□□□ 0.92
CLK3-217ENST00000566126 TACC3Q9Y6A5 838 aa20.8■□□□□ 0.92
CLK3-217ENST00000566126 SIPA1L1O43166 1804 aa20.79■□□□□ 0.92
CLK3-217ENST00000566126 CNMDO75829 334 aa20.79■□□□□ 0.92
CLK3-217ENST00000566126 HOXC6P09630 235 aa20.79■□□□□ 0.92
CLK3-217ENST00000566126 PBX2P40425 430 aa20.79■□□□□ 0.92
CLK3-217ENST00000566126 GTF3C2Q8WUA4 911 aaPredicted RBP20.79■□□□□ 0.92
CLK3-217ENST00000566126 FERMT2Q96AC1 680 aa20.79■□□□□ 0.92
CLK3-217ENST00000566126 SLC15A5A6NIM6 579 aa20.78■□□□□ 0.92
CLK3-217ENST00000566126 KIAA0355O15063 1070 aa20.78■□□□□ 0.92
CLK3-217ENST00000566126 NPM3O75607 178 aaKnown RBP20.78■□□□□ 0.92
CLK3-217ENST00000566126 CLTBP09497 229 aa20.78■□□□□ 0.92
CLK3-217ENST00000566126 PTPREP23469 700 aa20.78■□□□□ 0.92
CLK3-217ENST00000566126 JAG1P78504 1218 aa20.78■□□□□ 0.92
CLK3-217ENST00000566126 FPGSQ05932 587 aa20.78■□□□□ 0.92
CLK3-217ENST00000566126 SLC4A10Q6U841 1118 aa20.78■□□□□ 0.92
CLK3-217ENST00000566126 PBX4Q9BYU1 374 aa20.78■□□□□ 0.92
CLK3-217ENST00000566126 CWC22Q9HCG8 908 aaKnown RBP20.78■□□□□ 0.92
CLK3-217ENST00000566126 CXXC1Q9P0U4 656 aaPredicted RBP20.78■□□□□ 0.92
CLK3-217ENST00000566126 DENND2AQ9ULE3 1009 aa20.78■□□□□ 0.92
CLK3-217ENST00000566126 DZIP1Q86YF9 867 aaKnown RBP20.77■□□□□ 0.92
CLK3-217ENST00000566126 MROH7-TTC4A0A0A0MT08 1334 aa20.77■□□□□ 0.91
CLK3-217ENST00000566126 GRXCR1A8MXD5 290 aa20.76■□□□□ 0.91
CLK3-217ENST00000566126 C19orf81C9J6K1 198 aa20.76■□□□□ 0.91
CLK3-217ENST00000566126 GLRX3O76003 335 aaKnown RBP20.76■□□□□ 0.91
CLK3-217ENST00000566126 MYCNP04198 464 aaPredicted RBP20.76■□□□□ 0.91
CLK3-217ENST00000566126 RAG1P15918 1043 aa20.76■□□□□ 0.91
CLK3-217ENST00000566126 PHKA1P46020 1223 aa20.76■□□□□ 0.91
CLK3-217ENST00000566126 GRB14Q14449 540 aa20.76■□□□□ 0.91
CLK3-217ENST00000566126 LRRC41Q15345 812 aa20.76■□□□□ 0.91
CLK3-217ENST00000566126 TMEM31Q5JXX7 168 aa20.76■□□□□ 0.91
CLK3-217ENST00000566126 GNL3LQ9NVN8 582 aaKnown RBP20.76■□□□□ 0.91
CLK3-217ENST00000566126 FANCIQ9NVI1 1328 aa20.76■□□□□ 0.91
CLK3-217ENST00000566126 GPR75-ASB3A0A0A6YYF3 556 aa20.75■□□□□ 0.91
CLK3-217ENST00000566126 EYA2O00167 538 aa20.75■□□□□ 0.91
CLK3-217ENST00000566126 SEMA3EO15041 775 aa20.75■□□□□ 0.91
CLK3-217ENST00000566126 IGFBP4P22692 258 aa20.75■□□□□ 0.91
CLK3-217ENST00000566126 SHROOM1Q2M3G4 852 aaPredicted RBP20.75■□□□□ 0.91
CLK3-217ENST00000566126 WWC1Q8IX03 1113 aa20.75■□□□□ 0.91
CLK3-217ENST00000566126 ZGPATQ8N5A5 531 aaKnown RBP20.75■□□□□ 0.91
CLK3-217ENST00000566126 RABGAP1Q9Y3P9 1069 aa20.75■□□□□ 0.91
CLK3-217ENST00000566126 USP17L10C9JJH3 530 aa20.74■□□□□ 0.91
CLK3-217ENST00000566126 TFF2Q03403 129 aa20.74■□□□□ 0.91
CLK3-217ENST00000566126 CCDC27Q2M243 656 aa20.74■□□□□ 0.91
CLK3-217ENST00000566126 WDR78Q5VTH9 848 aa20.74■□□□□ 0.91
CLK3-217ENST00000566126 ATG9AQ7Z3C6 839 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms