RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 SLC45A1Q9Y2W3 748 aa22.22■■□□□ 1.15
CLN3-214ENST00000565140 KIAA0100Q14667 2235 aaKnown RBP22.22■■□□□ 1.15
CLN3-214ENST00000565140 MYH8P13535 1937 aa22.21■■□□□ 1.15
CLN3-214ENST00000565140 DOCK3Q8IZD9 2030 aa22.21■■□□□ 1.15
CLN3-214ENST00000565140 PRKAB2O43741 272 aa22.21■■□□□ 1.15
CLN3-214ENST00000565140 MBD4O95243 580 aa22.21■■□□□ 1.15
CLN3-214ENST00000565140 BCRP11274 1271 aa22.21■■□□□ 1.15
CLN3-214ENST00000565140 UBE3CQ15386 1083 aa22.21■■□□□ 1.15
CLN3-214ENST00000565140 PROCA1Q8NCQ7 364 aaPredicted RBP22.21■■□□□ 1.15
CLN3-214ENST00000565140 AS3MTQ9HBK9 375 aa22.21■■□□□ 1.15
CLN3-214ENST00000565140 DCP1AQ9NPI6 582 aaPredicted RBP22.21■■□□□ 1.15
CLN3-214ENST00000565140 MCM9Q9NXL9 1143 aa22.21■■□□□ 1.15
CLN3-214ENST00000565140 ZBTB21Q9ULJ3 1066 aa22.21■■□□□ 1.15
CLN3-214ENST00000565140 POLR3DP05423 398 aaPredicted RBP22.2■■□□□ 1.14
CLN3-214ENST00000565140 KIF22Q14807 665 aa22.2■■□□□ 1.14
CLN3-214ENST00000565140 ARHGEF6Q15052 776 aa22.2■■□□□ 1.14
CLN3-214ENST00000565140 SH3D19Q5HYK7 790 aa22.2■■□□□ 1.14
CLN3-214ENST00000565140 GPATCH3Q96I76 525 aa22.2■■□□□ 1.14
CLN3-214ENST00000565140 GH2P01242 217 aa22.19■■□□□ 1.14
CLN3-214ENST00000565140 CYP2D6P10635 497 aa22.19■■□□□ 1.14
CLN3-214ENST00000565140 SHMT1P34896 483 aa22.19■■□□□ 1.14
CLN3-214ENST00000565140 BACE1P56817 501 aa22.19■■□□□ 1.14
CLN3-214ENST00000565140 TRIM47Q96LD4 638 aa22.19■■□□□ 1.14
CLN3-214ENST00000565140 PUS7LQ9H0K6 701 aaKnown RBP22.19■■□□□ 1.14
CLN3-214ENST00000565140 GINM1Q9NU53 330 aa22.19■■□□□ 1.14
CLN3-214ENST00000565140 PSMC4P43686 418 aa22.18■■□□□ 1.14
CLN3-214ENST00000565140 GABPAQ06546 454 aa22.18■■□□□ 1.14
CLN3-214ENST00000565140 MTMR2Q13614 643 aa22.18■■□□□ 1.14
CLN3-214ENST00000565140 ZSCAN25Q6NSZ9 544 aa22.18■■□□□ 1.14
CLN3-214ENST00000565140 KBTBD3Q8NAB2 608 aa22.18■■□□□ 1.14
CLN3-214ENST00000565140 PTCH2Q9Y6C5 1203 aa22.18■■□□□ 1.14
CLN3-214ENST00000565140 MLLT1Q03111 559 aaPredicted RBP22.17■■□□□ 1.14
CLN3-214ENST00000565140 HDAC1Q13547 482 aaPredicted RBP22.17■■□□□ 1.14
CLN3-214ENST00000565140 CERKLQ49MI3 558 aaPredicted RBP22.17■■□□□ 1.14
CLN3-214ENST00000565140 PI4K2BQ8TCG2 481 aa22.17■■□□□ 1.14
CLN3-214ENST00000565140 TTC41PQ6P2S7 1318 aa22.16■■□□□ 1.14
CLN3-214ENST00000565140 BRCA2P51587 3418 aa22.16■■□□□ 1.14
CLN3-214ENST00000565140 ANKRD45Q5TZF3 282 aa22.16■■□□□ 1.14
CLN3-214ENST00000565140 ATP8A2Q9NTI2 1148 aa22.16■■□□□ 1.14
CLN3-214ENST00000565140 USP17L10C9JJH3 530 aa22.15■■□□□ 1.14
CLN3-214ENST00000565140 SMIM22K7EJ46 135 aa22.15■■□□□ 1.14
CLN3-214ENST00000565140 FMNL1O95466 1100 aaPredicted RBP22.15■■□□□ 1.14
CLN3-214ENST00000565140 GNRH1P01148 92 aa22.15■■□□□ 1.14
CLN3-214ENST00000565140 ABCB5Q2M3G0 1257 aa22.15■■□□□ 1.14
CLN3-214ENST00000565140 SMCR8Q8TEV9 937 aaPredicted RBP22.15■■□□□ 1.14
CLN3-214ENST00000565140 ARMC5Q96C12 935 aa22.15■■□□□ 1.14
CLN3-214ENST00000565140 PDE4DIPQ5VU43 2346 aa22.14■■□□□ 1.14
CLN3-214ENST00000565140 SALL3Q9BXA9 1300 aa22.14■■□□□ 1.14
CLN3-214ENST00000565140 CYP2D7A0A087X1C5 515 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 C19orf81C9J6K1 198 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 RNF113AO15541 343 aaKnown RBP22.14■■□□□ 1.13
CLN3-214ENST00000565140 OSBPP22059 807 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 GUCY1A2P33402 732 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 RAB3GAP1Q15042 981 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 SLC44A5Q8NCS7 719 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 EXOC6Q8TAG9 804 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 OSBP2Q969R2 916 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 DYNLL2Q96FJ2 89 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 ASCC2Q9H1I8 757 aaPredicted RBP22.14■■□□□ 1.13
CLN3-214ENST00000565140 EMILIN3Q9NT22 766 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 TMOD4Q9NZQ9 345 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 PNMA3Q9UL41 463 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 SLC4A4Q9Y6R1 1079 aa22.14■■□□□ 1.13
CLN3-214ENST00000565140 RBBP6Q7Z6E9 1792 aaKnown RBP22.13■■□□□ 1.13
CLN3-214ENST00000565140 MX1P20591 662 aa22.13■■□□□ 1.13
CLN3-214ENST00000565140 ANKRD13CQ8N6S4 541 aa22.13■■□□□ 1.13
CLN3-214ENST00000565140 GCC1Q96CN9 775 aa22.13■■□□□ 1.13
CLN3-214ENST00000565140 STRBPQ96SI9 672 aaKnown RBP22.13■■□□□ 1.13
CLN3-214ENST00000565140 SRRDQ9UH36 339 aa22.13■■□□□ 1.13
CLN3-214ENST00000565140 USP17L12C9JPN9 530 aa22.12■■□□□ 1.13
CLN3-214ENST00000565140 USP17L21D6R901 530 aa22.12■■□□□ 1.13
CLN3-214ENST00000565140 ERC2O15083 957 aa22.12■■□□□ 1.13
CLN3-214ENST00000565140 GLRX3O76003 335 aaKnown RBP22.12■■□□□ 1.13
CLN3-214ENST00000565140 HOXA7P31268 230 aaPredicted RBP22.12■■□□□ 1.13
CLN3-214ENST00000565140 PABPC4Q13310 644 aaKnown RBP eCLIP22.12■■□□□ 1.13
CLN3-214ENST00000565140 AAMPQ13685 434 aa22.12■■□□□ 1.13
CLN3-214ENST00000565140 SLC9C1Q4G0N8 1177 aa22.12■■□□□ 1.13
CLN3-214ENST00000565140 C12orf60Q5U649 245 aa22.12■■□□□ 1.13
CLN3-214ENST00000565140 ACER1Q8TDN7 264 aa22.12■■□□□ 1.13
CLN3-214ENST00000565140 SUPT16HQ9Y5B9 1047 aaKnown RBP22.12■■□□□ 1.13
CLN3-214ENST00000565140 PRMT2P55345 433 aa22.11■■□□□ 1.13
CLN3-214ENST00000565140 FCGRTP55899 365 aa22.11■■□□□ 1.13
CLN3-214ENST00000565140 USP17L2Q6R6M4 530 aa22.11■■□□□ 1.13
CLN3-214ENST00000565140 SH3TC2Q8TF17 1288 aa22.11■■□□□ 1.13
CLN3-214ENST00000565140 APPBP2Q92624 585 aa22.11■■□□□ 1.13
CLN3-214ENST00000565140 ZNF333Q96JL9 665 aa22.11■■□□□ 1.13
CLN3-214ENST00000565140 P2RX7Q99572 595 aaKnown RBP22.11■■□□□ 1.13
CLN3-214ENST00000565140 CABP5Q9NP86 173 aa22.11■■□□□ 1.13
CLN3-214ENST00000565140 POTEFA5A3E0 1075 aa22.1■■□□□ 1.13
CLN3-214ENST00000565140 HOXD10P28358 340 aa22.1■■□□□ 1.13
CLN3-214ENST00000565140 SEPT2Q15019 361 aa22.1■■□□□ 1.13
CLN3-214ENST00000565140 ZYXQ15942 572 aaKnown RBP22.1■■□□□ 1.13
CLN3-214ENST00000565140 CTR9Q6PD62 1173 aa22.1■■□□□ 1.13
CLN3-214ENST00000565140 GABRQQ9UN88 632 aa22.1■■□□□ 1.13
CLN3-214ENST00000565140 MYPNQ86TC9 1320 aa22.09■■□□□ 1.13
CLN3-214ENST00000565140 GSG1L2A8MUP6 293 aa22.09■■□□□ 1.13
CLN3-214ENST00000565140 M0R2C6 588 aa22.09■■□□□ 1.13
CLN3-214ENST00000565140 MPHOSPH10O00566 681 aaKnown RBP22.09■■□□□ 1.13
CLN3-214ENST00000565140 ZFYP08048 801 aaPredicted RBP22.09■■□□□ 1.13
CLN3-214ENST00000565140 GCLCP48506 637 aaPredicted RBP22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms