RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 NBPF6Q5VWK0 638 aa7.14□□□□□ -1.27
LINC00560-201ENST00000564593 CDC37L1Q7L3B6 337 aa7.14□□□□□ -1.27
LINC00560-201ENST00000564593 HNRNPLLQ8WVV9 542 aaKnown RBP7.14□□□□□ -1.27
LINC00560-201ENST00000564593 TMEM40Q8WWA1 233 aa7.14□□□□□ -1.27
LINC00560-201ENST00000564593 NBPF4Q96M43 638 aa7.14□□□□□ -1.27
LINC00560-201ENST00000564593 TRIM55Q9BYV6 548 aa7.14□□□□□ -1.27
LINC00560-201ENST00000564593 PIDD1Q9HB75 910 aa7.14□□□□□ -1.27
LINC00560-201ENST00000564593 GMIPQ9P107 970 aa7.14□□□□□ -1.27
LINC00560-201ENST00000564593 KLHL3Q9UH77 587 aa7.14□□□□□ -1.27
LINC00560-201ENST00000564593 SLC22A31A6NKX4 558 aa7.13□□□□□ -1.27
LINC00560-201ENST00000564593 MEIS3P2A8K0S8 358 aa7.13□□□□□ -1.27
LINC00560-201ENST00000564593 SART1O43290 800 aaKnown RBP7.13□□□□□ -1.27
LINC00560-201ENST00000564593 PPP2R5EQ16537 467 aa7.13□□□□□ -1.27
LINC00560-201ENST00000564593 RUFY4Q6ZNE9 571 aa7.13□□□□□ -1.27
LINC00560-201ENST00000564593 HID1Q8IV36 788 aa7.13□□□□□ -1.27
LINC00560-201ENST00000564593 C2CD4AQ8NCU7 369 aaPredicted RBP7.13□□□□□ -1.27
LINC00560-201ENST00000564593 CEP41Q9BYV8 373 aa7.13□□□□□ -1.27
LINC00560-201ENST00000564593 ACTL7BQ9Y614 415 aa7.13□□□□□ -1.27
LINC00560-201ENST00000564593 U2SURPO15042 1029 aaKnown RBP7.12□□□□□ -1.27
LINC00560-201ENST00000564593 KLF4O43474 513 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 NTF4P34130 210 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 IREB2P48200 963 aaKnown RBP7.12□□□□□ -1.27
LINC00560-201ENST00000564593 ACSF2Q96CM8 615 aaPredicted RBP7.12□□□□□ -1.27
LINC00560-201ENST00000564593 TM9SF2Q99805 663 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 OSBPL2Q9H1P3 480 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 GSX1Q9H4S2 264 aaPredicted RBP7.12□□□□□ -1.27
LINC00560-201ENST00000564593 ZSWIM4Q9H7M6 989 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 SSU72Q9NP77 194 aaKnown RBP7.12□□□□□ -1.27
LINC00560-201ENST00000564593 FAM105AQ9NUU6 356 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 TJP2Q9UDY2 1190 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 CHURC1-FNTBB4DL54 471 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 DNAJA2O60884 412 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 NEFMP07197 916 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 PREPP48147 710 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 USP11P51784 963 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 RAB33AQ14088 237 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 OVOS1Q6IE37 1185 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 MCATQ8IVS2 390 aaKnown RBP7.12□□□□□ -1.27
LINC00560-201ENST00000564593 KCT2Q8NC54 265 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 WFDC12Q8WWY7 111 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 ATG4CQ96DT6 458 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 TMEM87BQ96K49 555 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 KRTAP4-7Q9BYR0 210 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 ACTR10Q9NZ32 417 aa7.12□□□□□ -1.27
LINC00560-201ENST00000564593 UPK3BL1B0FP48 263 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 UPK3BL2E5RIL1 263 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 GAS2O43903 313 aaKnown RBP7.11□□□□□ -1.27
LINC00560-201ENST00000564593 GUCY2CP25092 1073 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 NOS3P29474 1203 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 YARSP54577 528 aaKnown RBP7.11□□□□□ -1.27
LINC00560-201ENST00000564593 ARSHQ5FYA8 562 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 NLRC3Q7RTR2 1065 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 SMYD4Q8IYR2 804 aaPredicted RBP7.11□□□□□ -1.27
LINC00560-201ENST00000564593 FAM13CQ8NE31 585 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 ISL2Q96A47 359 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 TNKS2Q9H2K2 1166 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 FBRSQ9HAH7 460 aa7.11□□□□□ -1.27
LINC00560-201ENST00000564593 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.1□□□□□ -1.27
LINC00560-201ENST00000564593 NME1P15531 152 aaKnown RBP7.1□□□□□ -1.27
LINC00560-201ENST00000564593 CASP7P55210 303 aa7.1□□□□□ -1.27
LINC00560-201ENST00000564593 CDCP2Q5VXM1 449 aa7.1□□□□□ -1.27
LINC00560-201ENST00000564593 SLC6A19Q695T7 634 aa7.1□□□□□ -1.27
LINC00560-201ENST00000564593 Q6ZS46 218 aa7.1□□□□□ -1.27
LINC00560-201ENST00000564593 MRPL41Q8IXM3 137 aaKnown RBP7.1□□□□□ -1.27
LINC00560-201ENST00000564593 C19orf47Q8N9M1 422 aaKnown RBP7.1□□□□□ -1.27
LINC00560-201ENST00000564593 UBL7Q96S82 380 aaPredicted RBP7.1□□□□□ -1.27
LINC00560-201ENST00000564593 CNNM2Q9H8M5 875 aa7.1□□□□□ -1.27
LINC00560-201ENST00000564593 SIRPGQ9P1W8 387 aa7.1□□□□□ -1.27
LINC00560-201ENST00000564593 A0A1W2PQH9 124 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 RAG1P15918 1043 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 RAB6AP20340 208 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 SERINC3Q13530 473 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 ADGRE1Q14246 886 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 MBTPS1Q14703 1052 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 NKG7Q16617 165 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 INTS3Q68E01 1043 aaKnown RBP7.09□□□□□ -1.27
LINC00560-201ENST00000564593 UBE3DQ7Z6J8 389 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 TTC6Q86TZ1 520 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.09□□□□□ -1.27
LINC00560-201ENST00000564593 TAB3Q8N5C8 712 aaPredicted RBP7.09□□□□□ -1.27
LINC00560-201ENST00000564593 PCOLCE2Q9UKZ9 415 aa7.09□□□□□ -1.27
LINC00560-201ENST00000564593 ACRP10323 421 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 SLBPQ14493 270 aaKnown RBP eCLIP7.08□□□□□ -1.28
LINC00560-201ENST00000564593 BMS1Q14692 1282 aaKnown RBP7.08□□□□□ -1.28
LINC00560-201ENST00000564593 NFE2L2Q16236 605 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 LARP1BQ659C4 914 aaKnown RBP7.08□□□□□ -1.28
LINC00560-201ENST00000564593 NOP9Q86U38 636 aaKnown RBP7.08□□□□□ -1.28
LINC00560-201ENST00000564593 SLFN12Q8IYM2 578 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 PHACTR4Q8IZ21 702 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 DPH2Q9BQC3 489 aaPredicted RBP7.08□□□□□ -1.28
LINC00560-201ENST00000564593 ST7Q9NRC1 585 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 FXNQ16595 210 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 MCTP1Q6DN14 999 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 CDPF1Q6NVV7 123 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 UNC5AQ6ZN44 842 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 CELF2-AS1Q8N7Q2 184 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 FAM46AQ96IP4 442 aaKnown RBP7.08□□□□□ -1.28
LINC00560-201ENST00000564593 SLC9A7Q96T83 725 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 YIPF2Q9BWQ6 316 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 PIF1Q9H611 641 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms