RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PATL2C9JE40 543 aaKnown RBP15.08■□□□□ 0
CLN3-210ENST00000563874 OAS2P29728 719 aaKnown RBP15.08■□□□□ 0
CLN3-210ENST00000563874 NUTM2AQ8IVF1 878 aaPredicted RBP15.08■□□□□ 0
CLN3-210ENST00000563874 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.08■□□□□ 0
CLN3-210ENST00000563874 SPATA31A3Q5VYP0 1347 aa15.07■□□□□ 0
CLN3-210ENST00000563874 TNS3Q68CZ2 1445 aa15.07■□□□□ 0
CLN3-210ENST00000563874 DDX60Q8IY21 1712 aaKnown RBP15.07■□□□□ 0
CLN3-210ENST00000563874 MYO1BO43795 1136 aa15.07■□□□□ 0
CLN3-210ENST00000563874 IL2RBP14784 551 aa15.07■□□□□ 0
CLN3-210ENST00000563874 TDO2P48775 406 aa15.07■□□□□ 0
CLN3-210ENST00000563874 SARSP49591 514 aaKnown RBP15.07■□□□□ 0
CLN3-210ENST00000563874 AKNAD1Q5T1N1 836 aa15.07■□□□□ 0
CLN3-210ENST00000563874 MIGA1Q8NAN2 632 aa15.07■□□□□ 0
CLN3-210ENST00000563874 AKAP11Q9UKA4 1901 aa15.07■□□□□ 0
CLN3-210ENST00000563874 ACTN4O43707 911 aaKnown RBP15.07■□□□□ 0
CLN3-210ENST00000563874 HNRNPH2P55795 449 aaKnown RBP15.07■□□□□ 0
CLN3-210ENST00000563874 RASGRF1Q13972 1273 aa15.07■□□□□ 0
CLN3-210ENST00000563874 WTAPQ15007 396 aa15.07■□□□□ 0
CLN3-210ENST00000563874 RILPL1Q5EBL4 403 aa15.07■□□□□ 0
CLN3-210ENST00000563874 GIGYF2Q6Y7W6 1299 aaKnown RBP15.07■□□□□ 0
CLN3-210ENST00000563874 GPR161Q8N6U8 529 aaKnown RBP15.07■□□□□ 0
CLN3-210ENST00000563874 EPSTI1Q96J88 318 aa15.07■□□□□ 0
CLN3-210ENST00000563874 PUF60Q9UHX1 559 aaKnown RBP15.07■□□□□ 0
CLN3-210ENST00000563874 GSG1L2A8MUP6 293 aa15.06■□□□□ 0
CLN3-210ENST00000563874 TFRCP02786 760 aaKnown RBP15.06■□□□□ 0
CLN3-210ENST00000563874 TPM1P09493 284 aa15.06■□□□□ 0
CLN3-210ENST00000563874 SMC1AQ14683 1233 aaKnown RBP15.06■□□□□ 0
CLN3-210ENST00000563874 NR1I3Q14994 352 aa15.06■□□□□ 0
CLN3-210ENST00000563874 SPATA5Q8NB90 893 aa15.06■□□□□ 0
CLN3-210ENST00000563874 WASF1Q92558 559 aa15.06■□□□□ 0
CLN3-210ENST00000563874 A0A087X0B3 334 aa15.06■□□□□ 0
CLN3-210ENST00000563874 GOLGA6L9A6NEM1 432 aa15.06■□□□□ 0
CLN3-210ENST00000563874 SMIM22K7EJ46 135 aa15.06■□□□□ 0
CLN3-210ENST00000563874 RBL2Q08999 1139 aa15.06■□□□□ 0
CLN3-210ENST00000563874 NT5DC1Q5TFE4 455 aa15.06■□□□□ 0
CLN3-210ENST00000563874 RAD9BQ6WBX8 426 aa15.06■□□□□ 0
CLN3-210ENST00000563874 RSRC2Q7L4I2 434 aaKnown RBP15.06■□□□□ 0
CLN3-210ENST00000563874 LCORLQ8N3X6 602 aa15.06■□□□□ 0
CLN3-210ENST00000563874 STAMQ92783 540 aa15.06■□□□□ 0
CLN3-210ENST00000563874 ARFGAP3Q9NP61 516 aa15.06■□□□□ 0
CLN3-210ENST00000563874 DACH1Q9UI36 760 aa15.06■□□□□ 0
CLN3-210ENST00000563874 ATRNO75882 1429 aa15.06■□□□□ 0
CLN3-210ENST00000563874 MYH7P12883 1935 aa15.06■□□□□ 0
CLN3-210ENST00000563874 MAP3K15Q6ZN16 1313 aa15.06■□□□□ 0
CLN3-210ENST00000563874 STK36Q9NRP7 1315 aa15.06■□□□□ 0
CLN3-210ENST00000563874 AKR1B15C9JRZ8 316 aaPredicted RBP15.06■□□□□ 0
CLN3-210ENST00000563874 CD44P16070 742 aaKnown RBP15.06■□□□□ 0
CLN3-210ENST00000563874 CCDC175P0C221 793 aa15.05■□□□□ 0
CLN3-210ENST00000563874 ARID4AP29374 1257 aaPredicted RBP15.05■□□□□ 0
CLN3-210ENST00000563874 PLCD1P51178 756 aa15.05■□□□□ 0
CLN3-210ENST00000563874 CRACR2BQ8N4Y2 399 aaPredicted RBP15.05■□□□□ 0
CLN3-210ENST00000563874 IGSF22Q8N9C0 903 aa15.05■□□□□ 0
CLN3-210ENST00000563874 RGS22Q8NE09 1264 aa15.05■□□□□ 0
CLN3-210ENST00000563874 SRPRBQ9Y5M8 271 aaKnown RBP15.05■□□□□ 0
CLN3-210ENST00000563874 SLC4A4Q9Y6R1 1079 aa15.05■□□□□ 0
CLN3-210ENST00000563874 PRDM1O75626 825 aa15.05■□□□□ -0
CLN3-210ENST00000563874 MAP3K12Q12852 859 aa15.05■□□□□ -0
CLN3-210ENST00000563874 NKX1-1Q15270 411 aaPredicted RBP15.05■□□□□ -0
CLN3-210ENST00000563874 EARS2Q5JPH6 523 aaKnown RBP15.05■□□□□ -0
CLN3-210ENST00000563874 PIGBQ92521 554 aa15.05■□□□□ -0
CLN3-210ENST00000563874 ZNF512BQ96KM6 892 aaPredicted RBP15.05■□□□□ -0
CLN3-210ENST00000563874 FOXP1Q9H334 677 aaPredicted RBP15.05■□□□□ -0
CLN3-210ENST00000563874 VPS54Q9P1Q0 977 aa15.05■□□□□ -0
CLN3-210ENST00000563874 CALCOCO1Q9P1Z2 691 aa15.05■□□□□ -0
CLN3-210ENST00000563874 GOLGA1Q92805 767 aa15.04■□□□□ -0
CLN3-210ENST00000563874 IQSEC3Q9UPP2 1182 aaPredicted RBP15.04■□□□□ -0
CLN3-210ENST00000563874 A0A1B0GTH6 734 aa15.04■□□□□ -0
CLN3-210ENST00000563874 ERICH2A1L162 156 aa15.04■□□□□ -0
CLN3-210ENST00000563874 VGLL3A8MV65 326 aa15.04■□□□□ -0
CLN3-210ENST00000563874 DEXIO95424 95 aa15.04■□□□□ -0
CLN3-210ENST00000563874 SART3Q15020 963 aaKnown RBP15.04■□□□□ -0
CLN3-210ENST00000563874 PUM3Q15397 648 aaKnown RBP15.04■□□□□ -0
CLN3-210ENST00000563874 CREBRFQ8IUR6 639 aa15.04■□□□□ -0
CLN3-210ENST00000563874 SHISA4Q96DD7 197 aa15.04■□□□□ -0
CLN3-210ENST00000563874 KRT23Q9C075 422 aa15.04■□□□□ -0
CLN3-210ENST00000563874 CNNM2Q9H8M5 875 aa15.04■□□□□ -0
CLN3-210ENST00000563874 ECM29Q5VYK3 1845 aa15.04■□□□□ -0
CLN3-210ENST00000563874 STARD3NLO95772 234 aa15.03■□□□□ -0
CLN3-210ENST00000563874 UQCRFS1P1P0C7P4 283 aa15.03■□□□□ -0
CLN3-210ENST00000563874 IRX5P78411 483 aaPredicted RBP15.03■□□□□ -0
CLN3-210ENST00000563874 ALX1Q15699 326 aa15.03■□□□□ -0
CLN3-210ENST00000563874 PPFIBP1Q86W92 1011 aa15.03■□□□□ -0
CLN3-210ENST00000563874 FANCBQ8NB91 859 aa15.03■□□□□ -0
CLN3-210ENST00000563874 LPIN2Q92539 896 aa15.03■□□□□ -0
CLN3-210ENST00000563874 RABGGTAQ92696 567 aa15.03■□□□□ -0
CLN3-210ENST00000563874 FUT8Q9BYC5 575 aa15.03■□□□□ -0
CLN3-210ENST00000563874 ADGRG1Q9Y653 693 aa15.03■□□□□ -0
CLN3-210ENST00000563874 ZNF142P52746 1687 aaPredicted RBP15.03■□□□□ -0
CLN3-210ENST00000563874 MINDY4BA8MYZ0 360 aa15.03■□□□□ -0
CLN3-210ENST00000563874 WNT7AO00755 349 aa15.03■□□□□ -0
CLN3-210ENST00000563874 APTXQ7Z2E3 356 aaKnown RBP15.03■□□□□ -0
CLN3-210ENST00000563874 ZNF654Q8IZM8 581 aa15.03■□□□□ -0
CLN3-210ENST00000563874 ABL1P00519 1130 aa15.03■□□□□ -0
CLN3-210ENST00000563874 CASP14P31944 242 aa15.03■□□□□ -0
CLN3-210ENST00000563874 CCT6AP40227 531 aaKnown RBP15.03■□□□□ -0
CLN3-210ENST00000563874 CHMP4BP1P59074 171 aa15.03■□□□□ -0
CLN3-210ENST00000563874 LONRF2Q1L5Z9 754 aa15.03■□□□□ -0
CLN3-210ENST00000563874 NOM1Q5C9Z4 860 aaKnown RBP15.03■□□□□ -0
CLN3-210ENST00000563874 UBXN6Q9BZV1 441 aa15.03■□□□□ -0
CLN3-210ENST00000563874 CDHR2Q9BYE9 1310 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms