RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 WNK4Q96J92 1243 aa12.69□□□□□ -0.38
TPM1-229ENST00000561242 CNNM2Q9H8M5 875 aa12.69□□□□□ -0.38
TPM1-229ENST00000561242 UPF2Q9HAU5 1272 aaKnown RBP12.69□□□□□ -0.38
TPM1-229ENST00000561242 ZNF112Q9UJU3 913 aa12.69□□□□□ -0.38
TPM1-229ENST00000561242 FZD1Q9UP38 647 aa12.69□□□□□ -0.38
TPM1-229ENST00000561242 TRIM75PA6NK02 468 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 FAM196BA6NMK8 535 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 C19orf81C9J6K1 198 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 GDF11O95390 407 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 GH2P01242 217 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 FGAP02671 866 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 OSBPP22059 807 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 PLCD1P51178 756 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 SART3Q15020 963 aaKnown RBP12.68□□□□□ -0.38
TPM1-229ENST00000561242 SH3BP5LQ7L8J4 393 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 RASAL3Q86YV0 1011 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 ZNF280CQ8ND82 737 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 ESR2Q92731 530 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 KRT23Q9C075 422 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 KANSL2Q9H9L4 492 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 CWC22Q9HCG8 908 aaKnown RBP12.68□□□□□ -0.38
TPM1-229ENST00000561242 PNMA3Q9UL41 463 aa12.68□□□□□ -0.38
TPM1-229ENST00000561242 A0A1B0GUL6 1792 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 CCL15-CCL14A0A0B4J2E2 113 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 SPDYE5A6NIY4 337 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 USP17L10C9JJH3 530 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 CYP2D6P10635 497 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 PTPRAP18433 802 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 FGD1P98174 961 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 CCL15Q16663 113 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.67□□□□□ -0.38
TPM1-229ENST00000561242 C16orf86Q6ZW13 317 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 IQCA1Q86XH1 822 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 DYNLL2Q96FJ2 89 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 CLMNQ96JQ2 1002 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 ZFYVE28Q9HCC9 887 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 GOPCQ9HD26 462 aa12.67□□□□□ -0.38
TPM1-229ENST00000561242 COL2A1P02458 1487 aaPredicted RBP12.66□□□□□ -0.38
TPM1-229ENST00000561242 AOC2O75106 756 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 CHGBP05060 677 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 MAP3K10Q02779 954 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 SPP2Q13103 211 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 KIF22Q14807 665 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 USP17L2Q6R6M4 530 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 CDAN1Q8IWY9 1227 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 ESYT1Q9BSJ8 1104 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 UBAC1Q9BSL1 405 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 ZBTB21Q9ULJ3 1066 aa12.66□□□□□ -0.38
TPM1-229ENST00000561242 CYP2D7A0A087X1C5 515 aa12.65□□□□□ -0.38
TPM1-229ENST00000561242 SGSM2O43147 1006 aa12.65□□□□□ -0.38
TPM1-229ENST00000561242 HAND2P61296 217 aa12.65□□□□□ -0.38
TPM1-229ENST00000561242 IRX3P78415 501 aaPredicted RBP12.65□□□□□ -0.38
TPM1-229ENST00000561242 TFAP4Q01664 338 aa12.65□□□□□ -0.38
TPM1-229ENST00000561242 ICA1Q05084 483 aa12.65□□□□□ -0.38
TPM1-229ENST00000561242 CTDSPL2Q05D32 466 aa12.65□□□□□ -0.38
TPM1-229ENST00000561242 IKQ13123 557 aaPredicted RBP12.65□□□□□ -0.38
TPM1-229ENST00000561242 AKNAD1Q5T1N1 836 aa12.65□□□□□ -0.38
TPM1-229ENST00000561242 TATDN1Q6P1N9 297 aa12.65□□□□□ -0.38
TPM1-229ENST00000561242 SMCR8Q8TEV9 937 aaPredicted RBP12.65□□□□□ -0.38
TPM1-229ENST00000561242 SNCAIPQ9Y6H5 919 aa12.65□□□□□ -0.38
TPM1-229ENST00000561242 PHF20L1A8MW92 1017 aa12.64□□□□□ -0.39
TPM1-229ENST00000561242 IRF6O14896 467 aa12.64□□□□□ -0.39
TPM1-229ENST00000561242 PRDM1O75626 825 aa12.64□□□□□ -0.39
TPM1-229ENST00000561242 KRT32Q14532 448 aa12.64□□□□□ -0.39
TPM1-229ENST00000561242 ZYXQ15942 572 aaKnown RBP12.64□□□□□ -0.39
TPM1-229ENST00000561242 VPS53Q5VIR6 699 aa12.64□□□□□ -0.39
TPM1-229ENST00000561242 SYNE3Q6ZMZ3 975 aa12.64□□□□□ -0.39
TPM1-229ENST00000561242 ZNF589Q86UQ0 364 aaPredicted RBP12.64□□□□□ -0.39
TPM1-229ENST00000561242 METTL16Q86W50 562 aaKnown RBP12.64□□□□□ -0.39
TPM1-229ENST00000561242 NCOA7Q8NI08 942 aa12.64□□□□□ -0.39
TPM1-229ENST00000561242 STX8Q9UNK0 236 aa12.64□□□□□ -0.39
TPM1-229ENST00000561242 MYH13Q9UKX3 1938 aa12.64□□□□□ -0.39
TPM1-229ENST00000561242 PSME4Q14997 1843 aa12.63□□□□□ -0.39
TPM1-229ENST00000561242 TRPA1O75762 1119 aa12.63□□□□□ -0.39
TPM1-229ENST00000561242 TTLL1O95922 423 aa12.63□□□□□ -0.39
TPM1-229ENST00000561242 CTCFP49711 727 aaPredicted RBP12.63□□□□□ -0.39
TPM1-229ENST00000561242 SEPT2Q15019 361 aa12.63□□□□□ -0.39
TPM1-229ENST00000561242 TAF1CQ15572 869 aaPredicted RBP12.63□□□□□ -0.39
TPM1-229ENST00000561242 SAMD1Q6SPF0 538 aaPredicted RBP12.63□□□□□ -0.39
TPM1-229ENST00000561242 PARK7Q99497 189 aaKnown RBP12.63□□□□□ -0.39
TPM1-229ENST00000561242 WDR18Q9BV38 432 aa12.63□□□□□ -0.39
TPM1-229ENST00000561242 CLIP2Q9UDT6 1046 aa12.63□□□□□ -0.39
TPM1-229ENST00000561242 ANAPC4Q9UJX5 808 aa12.63□□□□□ -0.39
TPM1-229ENST00000561242 ZMYM6O95789 1325 aa12.62□□□□□ -0.39
TPM1-229ENST00000561242 PSMA5P28066 241 aa12.62□□□□□ -0.39
TPM1-229ENST00000561242 SHMT1P34896 483 aa12.62□□□□□ -0.39
TPM1-229ENST00000561242 TM4SF4P48230 202 aa12.62□□□□□ -0.39
TPM1-229ENST00000561242 BACE1P56817 501 aa12.62□□□□□ -0.39
TPM1-229ENST00000561242 MTMR2Q13614 643 aa12.62□□□□□ -0.39
TPM1-229ENST00000561242 IFNL1Q8IU54 200 aa12.62□□□□□ -0.39
TPM1-229ENST00000561242 PROCA1Q8NCQ7 364 aaPredicted RBP12.62□□□□□ -0.39
TPM1-229ENST00000561242 SLC44A5Q8NCS7 719 aa12.62□□□□□ -0.39
TPM1-229ENST00000561242 GTF3C2Q8WUA4 911 aaPredicted RBP12.62□□□□□ -0.39
TPM1-229ENST00000561242 EPB41L4AQ9HCS5 686 aaPredicted RBP12.62□□□□□ -0.39
TPM1-229ENST00000561242 AFG3L2Q9Y4W6 797 aa12.62□□□□□ -0.39
TPM1-229ENST00000561242 RBM8AQ9Y5S9 174 aaKnown RBP12.62□□□□□ -0.39
TPM1-229ENST00000561242 PAPPA2Q9BXP8 1791 aa12.61□□□□□ -0.39
TPM1-229ENST00000561242 MYH2Q9UKX2 1941 aa12.61□□□□□ -0.39
TPM1-229ENST00000561242 HMGB1P09429 215 aaKnown RBP12.61□□□□□ -0.39
TPM1-229ENST00000561242 AKR1B1P15121 316 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms