RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 GPAA1O43292 621 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 RNASE9P60153 205 aaKnown RBP14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 SFMBT2Q5VUG0 894 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 DCUN1D2Q6PH85 259 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 SH3TC1Q8TE82 1336 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 P3H4Q92791 437 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 RAB3IPQ96QF0 476 aaPredicted RBP14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 TRIM31Q9BZY9 425 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 ARHGEF10LQ9HCE6 1279 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 TMOD4Q9NZQ9 345 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 MAPK8IP1Q9UQF2 711 aa14.66□□□□□ -0.06
CSPG4P11-201ENST00000560634 FANCAO15360 1455 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 WHAMMP3Q1A5X7 153 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 KRT71Q3SY84 523 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 KRT40Q6A162 431 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 TAB2Q9NYJ8 693 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 IBTKQ9P2D0 1353 aaPredicted RBP14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 GNA14O95837 355 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 KRT15P19012 456 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 CCDC105Q8IYK2 499 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 PHACTR3Q96KR7 559 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 MAST3O60307 1309 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 DAPK3O43293 454 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 HIBADHP31937 336 aaKnown RBP14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 DBNDD2Q9BQY9 259 aa14.65□□□□□ -0.06
CSPG4P11-201ENST00000560634 HMGB1P1B2RPK0 211 aaPredicted RBP14.65□□□□□ -0.07
CSPG4P11-201ENST00000560634 KRT24Q2M2I5 525 aa14.65□□□□□ -0.07
CSPG4P11-201ENST00000560634 SH2D4BQ5SQS7 431 aa14.65□□□□□ -0.07
CSPG4P11-201ENST00000560634 CDAN1Q8IWY9 1227 aa14.65□□□□□ -0.07
CSPG4P11-201ENST00000560634 KLHL7Q8IXQ5 586 aa14.65□□□□□ -0.07
CSPG4P11-201ENST00000560634 ACSBG1Q96GR2 724 aa14.65□□□□□ -0.07
CSPG4P11-201ENST00000560634 HAUS7Q99871 368 aa14.65□□□□□ -0.07
CSPG4P11-201ENST00000560634 GPCPD1Q9NPB8 672 aa14.65□□□□□ -0.07
CSPG4P11-201ENST00000560634 SAR1BQ9Y6B6 198 aa14.65□□□□□ -0.07
CSPG4P11-201ENST00000560634 SETSIPP0DME0 302 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 OAS2P29728 719 aaKnown RBP14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 SH3BGRP55822 239 aaPredicted RBP14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 IRX5P78411 483 aaPredicted RBP14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 BEND3Q5T5X7 828 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 MAP3K21Q5TCX8 1036 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 SPATS2Q86XZ4 545 aaKnown RBP14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 CCDC125Q86Z20 511 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 EPSTI1Q96J88 318 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 PRAG1Q86YV5 1406 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 EXOC3O60645 756 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 SP4Q02446 784 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 ATP2A3Q93084 1043 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 SLF1Q9BQI6 1058 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 UHRF1BP1LA0JNW5 1464 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 HARSP12081 509 aaKnown RBP14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 IRX4P78413 519 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 FAM173BQ6P4H8 233 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 TRIM58Q8NG06 486 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 NCOA5Q9HCD5 579 aaKnown RBP14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 HOMER3Q9NSC5 361 aa14.64□□□□□ -0.07
CSPG4P11-201ENST00000560634 ZNF853P0CG23 659 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 ADCY7P51828 1080 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 BRDTQ58F21 947 aaPredicted RBP14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 DENND2CQ68D51 928 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 OR8K1Q8NGG5 319 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 RNF34Q969K3 372 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 IFIH1Q9BYX4 1025 aaKnown RBP14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 LMBRD1Q9NUN5 540 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 MTX1Q13505 466 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 SEPT14Q6ZU15 432 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 RNF10Q8N5U6 811 aaKnown RBP14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 ZBTB9Q96C00 473 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 NT5C3AQ9H0P0 336 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 HAUS2Q9NVX0 235 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 CLGNO14967 610 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 RFC1P35251 1148 aaPredicted RBP14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 SARNPP82979 210 aaKnown RBP14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 NELFBQ8WX92 580 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 IWS1Q96ST2 819 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 RRAGDQ9NQL2 400 aaPredicted RBP14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 DDX41Q9UJV9 622 aaKnown RBP14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 PARP3Q9Y6F1 533 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 IP6K1Q92551 441 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 LRRC59Q96AG4 307 aaKnown RBP14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 XAGE2Q96GT9 111 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 PCDH11XQ9BZA7 1347 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 PCDH11YQ9BZA8 1340 aa14.63□□□□□ -0.07
CSPG4P11-201ENST00000560634 PHLDB3Q6NSJ2 640 aa14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 ARMT1Q9H993 441 aa14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 PDE8AO60658 829 aa14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 TROVE2P10155 538 aaKnown RBP eCLIP14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 ITGA6P23229 1130 aa14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 CNGA1P29973 690 aa14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 ADALQ6DHV7 355 aa14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 RBM17Q96I25 401 aaKnown RBP14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 BRD1O95696 1058 aa14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 VCX3AQ9NNX9 186 aa14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 AMFRQ9UKV5 643 aa14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 MRRFQ96E11 262 aaKnown RBP14.62□□□□□ -0.07
CSPG4P11-201ENST00000560634 RGS16O15492 202 aaPredicted RBP14.61□□□□□ -0.07
CSPG4P11-201ENST00000560634 CHMP2AO43633 222 aa14.61□□□□□ -0.07
CSPG4P11-201ENST00000560634 GCP02774 474 aa14.61□□□□□ -0.07
CSPG4P11-201ENST00000560634 CABP7Q86V35 215 aa14.61□□□□□ -0.07
CSPG4P11-201ENST00000560634 GBP7Q8N8V2 638 aaPredicted RBP14.61□□□□□ -0.07
CSPG4P11-201ENST00000560634 TESK2Q96S53 571 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms