RNA–Protein interactions for RNA: ENST00000560433.5

SNRPA1-211, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 2,440 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-211ENST00000560433 TEKT1Q969V4 418 aa12.68□□□□□ -0.38
SNRPA1-211ENST00000560433 NAV1Q8NEY1 1877 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 SNED1Q8TER0 1413 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 KIF28PB7ZC32 967 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 PTMSP20962 102 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 CDK8P49336 464 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 STRIP1Q5VSL9 837 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 ZNF444Q8N0Y2 327 aaPredicted RBP12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 LARGE2Q8N3Y3 721 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 STX8Q9UNK0 236 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 FAM196BA6NMK8 535 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 SSRP1Q08945 709 aaKnown RBP12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 CCDC93Q567U6 631 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 RCSD1Q6JBY9 416 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 FBXO18Q8NFZ0 1043 aa12.67□□□□□ -0.38
SNRPA1-211ENST00000560433 MYH1P12882 1939 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 PLCG2P16885 1265 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 RASA1P20936 1047 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 POLD1P28340 1107 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 TROAPQ12815 778 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 ZSCAN23Q3MJ62 389 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 CPLX2Q6PUV4 134 aaKnown RBP12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 CATIPQ7Z7H3 387 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 CLEC10AQ8IUN9 316 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 TMTC2Q8N394 836 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 SPATA32Q96LK8 384 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 KCNJ14Q9UNX9 436 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 KIF3AQ9Y496 699 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 COL4A5P29400 1685 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 SYCE3A1L190 88 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 EIF6P56537 245 aaKnown RBP12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 TMED8Q6PL24 325 aaPredicted RBP12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 USP28Q96RU2 1077 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 MTFR1LQ9H019 292 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 PIM2Q9P1W9 311 aa12.66□□□□□ -0.38
SNRPA1-211ENST00000560433 KRT40Q6A162 431 aa12.65□□□□□ -0.38
SNRPA1-211ENST00000560433 NBPF11Q86T75 865 aa12.65□□□□□ -0.38
SNRPA1-211ENST00000560433 TDRD3Q9H7E2 651 aaKnown RBP12.65□□□□□ -0.38
SNRPA1-211ENST00000560433 SCAF8Q9UPN6 1271 aaKnown RBP12.65□□□□□ -0.38
SNRPA1-211ENST00000560433 SUGT1Q9Y2Z0 365 aa12.65□□□□□ -0.38
SNRPA1-211ENST00000560433 PSMD14O00487 310 aa12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 CDKL5O76039 1030 aa12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 IFNAR1P17181 557 aa12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 CRACR2BQ8N4Y2 399 aaPredicted RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 LEO1Q8WVC0 666 aaPredicted RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 ZSCAN16Q9H4T2 348 aaPredicted RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 BCS1LQ9Y276 419 aa12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 FMNL1O95466 1100 aaPredicted RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 PCP11498 1178 aaKnown RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 VEGFAP15692 232 aaPredicted RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 SHROOM1Q2M3G4 852 aaPredicted RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 HHIPL2Q6UWX4 724 aa12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 C16orf86Q6ZW13 317 aa12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 STAG2Q8N3U4 1231 aa12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 TMEM87AQ8NBN3 555 aa12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 PRMT6Q96LA8 375 aaPredicted RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 CPVLQ9H3G5 476 aa12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 V9GY48 417 aaPredicted RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 DDX60LQ5H9U9 1706 aaKnown RBP12.64□□□□□ -0.39
SNRPA1-211ENST00000560433 GOLGA6L3A6NEY3 463 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 GOLGA8HP0CJ92 632 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 UBE2HP62256 183 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 CC2D2BQ6DHV5 1058 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 RTKN2Q8IZC4 609 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 SUPT20HQ8NEM7 779 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 KAT14Q9H8E8 782 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 ECM29Q5VYK3 1845 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 DDTLA6NHG4 134 aaPredicted RBP12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 KIF23Q02241 960 aaPredicted RBP12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 CFAP100Q494V2 611 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 ZSCAN29Q8IWY8 852 aaPredicted RBP12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 SRBD1Q8N5C6 995 aaKnown RBP12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 PNMA1Q8ND90 353 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 SHISA4Q96DD7 197 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 PGBD1Q96JS3 809 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 ZDHHC15Q96MV8 337 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 MTA3Q9BTC8 594 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 OSBPL5Q9H0X9 879 aaPredicted RBP12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 ROBO3Q96MS0 1386 aa12.63□□□□□ -0.39
SNRPA1-211ENST00000560433 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 CLRN2A0PK11 232 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 MBD3O95983 291 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 PDIA4P13667 645 aaKnown RBP12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 GNL2Q13823 731 aaKnown RBP12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 DALRD3Q5D0E6 543 aaKnown RBP12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 TRIM22Q8IYM9 498 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 CEP95Q96GE4 821 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 VPS54Q9P1Q0 977 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 CLIC4Q9Y696 253 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 DLEC1Q9Y238 1755 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 SHTN1A0MZ66 631 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 BTBD18B2RXH4 712 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 AKR1B1P15121 316 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 LIG1P18858 919 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 CERS3Q8IU89 383 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 NLGN2Q8NFZ4 835 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 CTCFLQ8NI51 663 aaPredicted RBP12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 TMEM47Q9BQJ4 181 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 FAM198AQ9UFP1 575 aa12.62□□□□□ -0.39
SNRPA1-211ENST00000560433 CCDC196A0A1B0GTZ2 297 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms