RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.25■□□□□ 0.03
SNX1-209ENST00000559961 GDF11O95390 407 aa15.24■□□□□ 0.03
SNX1-209ENST00000559961 GJB1P08034 283 aa15.24■□□□□ 0.03
SNX1-209ENST00000559961 CTGFP29279 349 aa15.24■□□□□ 0.03
SNX1-209ENST00000559961 ADGRA1Q86SQ6 560 aa15.24■□□□□ 0.03
SNX1-209ENST00000559961 DDRGK1Q96HY6 314 aa15.24■□□□□ 0.03
SNX1-209ENST00000559961 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.24■□□□□ 0.032e-6■■■□□ 19
SNX1-209ENST00000559961 ASCC2Q9H1I8 757 aaPredicted RBP15.24■□□□□ 0.03
SNX1-209ENST00000559961 SERPINB13Q9UIV8 391 aa15.24■□□□□ 0.03
SNX1-209ENST00000559961 TFRCP02786 760 aaKnown RBP15.23■□□□□ 0.03
SNX1-209ENST00000559961 USP14P54578 494 aa15.23■□□□□ 0.03
SNX1-209ENST00000559961 IRF5Q13568 498 aa15.23■□□□□ 0.03
SNX1-209ENST00000559961 PDE3AQ14432 1141 aa15.23■□□□□ 0.03
SNX1-209ENST00000559961 RAB3GAP1Q15042 981 aa15.23■□□□□ 0.03
SNX1-209ENST00000559961 MTFR1Q15390 333 aa15.23■□□□□ 0.03
SNX1-209ENST00000559961 CERKLQ49MI3 558 aaPredicted RBP15.23■□□□□ 0.03
SNX1-209ENST00000559961 USP17L2Q6R6M4 530 aa15.23■□□□□ 0.03
SNX1-209ENST00000559961 METTL16Q86W50 562 aaKnown RBP15.23■□□□□ 0.03
SNX1-209ENST00000559961 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.23■□□□□ 0.03
SNX1-209ENST00000559961 ZBTB40Q9NUA8 1239 aa15.23■□□□□ 0.03
SNX1-209ENST00000559961 ZBTB21Q9ULJ3 1066 aa15.23■□□□□ 0.03
SNX1-209ENST00000559961 GABRQQ9UN88 632 aa15.23■□□□□ 0.03
SNX1-209ENST00000559961 DOCK2Q92608 1830 aa15.22■□□□□ 0.03
SNX1-209ENST00000559961 GOLIM4O00461 696 aa15.22■□□□□ 0.03
SNX1-209ENST00000559961 HOXA7P31268 230 aaPredicted RBP15.22■□□□□ 0.03
SNX1-209ENST00000559961 GJA8P48165 433 aa15.22■□□□□ 0.03
SNX1-209ENST00000559961 GPRC5AQ8NFJ5 357 aa15.22■□□□□ 0.03
SNX1-209ENST00000559961 EHD4Q9H223 541 aa15.22■□□□□ 0.03
SNX1-209ENST00000559961 ANTXR1Q9H6X2 564 aa15.22■□□□□ 0.03
SNX1-209ENST00000559961 NDUFB9Q9Y6M9 179 aa15.22■□□□□ 0.03
SNX1-209ENST00000559961 GH2P01242 217 aa15.21■□□□□ 0.03
SNX1-209ENST00000559961 INHAP05111 366 aa15.21■□□□□ 0.03
SNX1-209ENST00000559961 ABCB5Q2M3G0 1257 aa15.21■□□□□ 0.03
SNX1-209ENST00000559961 ZSCAN25Q6NSZ9 544 aa15.21■□□□□ 0.03
SNX1-209ENST00000559961 MCM9Q9NXL9 1143 aa15.21■□□□□ 0.03
SNX1-209ENST00000559961 NR2E3Q9Y5X4 410 aa15.21■□□□□ 0.03
SNX1-209ENST00000559961 MPHOSPH10O00566 681 aaKnown RBP15.2■□□□□ 0.02
SNX1-209ENST00000559961 GLRX3O76003 335 aaKnown RBP15.2■□□□□ 0.02
SNX1-209ENST00000559961 ELNP15502 786 aa15.2■□□□□ 0.02
SNX1-209ENST00000559961 PDE6AP16499 860 aa15.2■□□□□ 0.02
SNX1-209ENST00000559961 MAPK4P31152 587 aa15.2■□□□□ 0.02
SNX1-209ENST00000559961 CCNA1P78396 465 aa15.2■□□□□ 0.02
SNX1-209ENST00000559961 RRP1BQ14684 758 aaKnown RBP15.2■□□□□ 0.02
SNX1-209ENST00000559961 U2AF1L4Q8WU68 220 aaKnown RBP15.2■□□□□ 0.02
SNX1-209ENST00000559961 GPATCH3Q96I76 525 aa15.2■□□□□ 0.02
SNX1-209ENST00000559961 P2RX7Q99572 595 aaKnown RBP15.2■□□□□ 0.02
SNX1-209ENST00000559961 PDE4DIPQ5VU43 2346 aa15.2■□□□□ 0.02
SNX1-209ENST00000559961 USP17L15C9J2P7 530 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 USP17L13C9JLJ4 530 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 USP17L11C9JVI0 530 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 USP17L18D6R9N7 530 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 USP17L22D6RA61 530 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 USP17L17D6RBQ6 530 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 USP17L19D6RCP7 530 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 USP17L20D6RJB6 530 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 SGPL1O95470 568 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 HERVK_113P62684 666 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 USP17L24Q0WX57 530 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 TRMT44Q8IYL2 757 aaKnown RBP15.19■□□□□ 0.02
SNX1-209ENST00000559961 NUDT12Q9BQG2 462 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 LRRCC1Q9C099 1032 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 UNC93B1Q9H1C4 597 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 PAG1Q9NWQ8 432 aa15.19■□□□□ 0.02
SNX1-209ENST00000559961 ZNF532Q9HCE3 1301 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 FARP2O94887 1054 aaPredicted RBP15.18■□□□□ 0.02
SNX1-209ENST00000559961 HMGCRP04035 888 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 ZYXQ15942 572 aaKnown RBP15.18■□□□□ 0.02
SNX1-209ENST00000559961 TATDN1Q6P1N9 297 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 SOCS4Q8WXH5 440 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 DEFB118Q96PH6 123 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 PAGR1Q9BTK6 254 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 BOLA2Q9H3K6 86 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 DNAJC18Q9H819 358 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 HMX1Q9NP08 348 aaPredicted RBP15.18■□□□□ 0.02
SNX1-209ENST00000559961 MORF4L1Q9UBU8 362 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 DOCK1Q14185 1865 aa15.18■□□□□ 0.02
SNX1-209ENST00000559961 ATP5JP18859 108 aa15.17■□□□□ 0.02
SNX1-209ENST00000559961 RIOK1Q9BRS2 568 aaKnown RBP15.17■□□□□ 0.02
SNX1-209ENST00000559961 PCDH10Q9P2E7 1040 aa15.17■□□□□ 0.02
SNX1-209ENST00000559961 ZBTB47Q9UFB7 747 aaPredicted RBP15.17■□□□□ 0.02
SNX1-209ENST00000559961 SWAP70Q9UH65 585 aa15.17■□□□□ 0.02
SNX1-209ENST00000559961 CYP2B6P20813 491 aa15.16■□□□□ 0.02
SNX1-209ENST00000559961 HABP4Q5JVS0 413 aaKnown RBP15.16■□□□□ 0.02
SNX1-209ENST00000559961 WDR78Q5VTH9 848 aa15.16■□□□□ 0.02
SNX1-209ENST00000559961 SH2D4AQ9H788 454 aa15.16■□□□□ 0.02
SNX1-209ENST00000559961 EMILIN3Q9NT22 766 aa15.16■□□□□ 0.02
SNX1-209ENST00000559961 ATP8A2Q9NTI2 1148 aa15.16■□□□□ 0.02
SNX1-209ENST00000559961 RABGAP1Q9Y3P9 1069 aa15.16■□□□□ 0.02
SNX1-209ENST00000559961 IVNS1ABPQ9Y6Y0 642 aa15.16■□□□□ 0.02
SNX1-209ENST00000559961 RPTORQ8N122 1335 aa15.16■□□□□ 0.02
SNX1-209ENST00000559961 RGS2P41220 211 aa15.15■□□□□ 0.02
SNX1-209ENST00000559961 PLCD1P51178 756 aa15.15■□□□□ 0.02
SNX1-209ENST00000559961 ERVK-9P63128 1117 aa15.15■□□□□ 0.02
SNX1-209ENST00000559961 ERVK-24P63145 666 aa15.15■□□□□ 0.02
SNX1-209ENST00000559961 LRRFIP1Q32MZ4 808 aaKnown RBP15.15■□□□□ 0.02
SNX1-209ENST00000559961 PLEKHH3Q7Z736 793 aa15.15■□□□□ 0.02
SNX1-209ENST00000559961 HAUS7Q99871 368 aa15.15■□□□□ 0.02
SNX1-209ENST00000559961 KIAA1683Q9H0B3 1180 aa15.15■□□□□ 0.02
SNX1-209ENST00000559961 HOXC10Q9NYD6 342 aa15.15■□□□□ 0.02
SNX1-209ENST00000559961 KIAA0100Q14667 2235 aaKnown RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms