RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PRPF40AO75400 957 aaKnown RBP8.66□□□□□ -1.02
VPS13C-208ENST00000559119 ZNF865P0CJ78 1059 aaPredicted RBP8.66□□□□□ -1.02
VPS13C-208ENST00000559119 RPS26P62854 115 aaKnown RBP8.66□□□□□ -1.02
VPS13C-208ENST00000559119 LETMD1Q6P1Q0 360 aa8.66□□□□□ -1.02
VPS13C-208ENST00000559119 C22orf34Q6ZV56 151 aa8.66□□□□□ -1.02
VPS13C-208ENST00000559119 ATP13A1Q9HD20 1204 aa8.66□□□□□ -1.02
VPS13C-208ENST00000559119 SEMA3GQ9NS98 782 aa8.66□□□□□ -1.02
VPS13C-208ENST00000559119 H3BS24 57 aa8.65□□□□□ -1.02
VPS13C-208ENST00000559119 GRK4P32298 578 aa8.65□□□□□ -1.02
VPS13C-208ENST00000559119 CDK8P49336 464 aa8.65□□□□□ -1.02
VPS13C-208ENST00000559119 NPAS4Q8IUM7 802 aa8.65□□□□□ -1.02
VPS13C-208ENST00000559119 XAGE3Q8WTP9 111 aa8.65□□□□□ -1.02
VPS13C-208ENST00000559119 AK5Q9Y6K8 562 aa8.65□□□□□ -1.02
VPS13C-208ENST00000559119 ARID1BQ8NFD5 2236 aaPredicted RBP8.65□□□□□ -1.03
VPS13C-208ENST00000559119 CNTNAP4Q9C0A0 1308 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 DBX1A6NMT0 343 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 CBX7O95931 251 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 CST3P01034 146 aaPredicted RBP8.64□□□□□ -1.03
VPS13C-208ENST00000559119 CYP7A1P22680 504 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 SEPT6Q14141 434 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 MLANAQ16655 118 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 PRAMEF13Q5VWM6 474 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 RIN3Q8TB24 985 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 FAM84AQ96KN4 292 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 PCDHB5Q9Y5E4 795 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 CAPN6Q9Y6Q1 641 aa8.64□□□□□ -1.03
VPS13C-208ENST00000559119 MAP3K11Q16584 847 aa8.63□□□□□ -1.03
VPS13C-208ENST00000559119 ZNF503-AS2A6NEH8 195 aa8.62□□□□□ -1.03
VPS13C-208ENST00000559119 THAP5Q7Z6K1 395 aa8.62□□□□□ -1.03
VPS13C-208ENST00000559119 KIRREL1Q96J84 757 aa8.62□□□□□ -1.03
VPS13C-208ENST00000559119 COX4I2Q96KJ9 171 aa8.62□□□□□ -1.03
VPS13C-208ENST00000559119 DUSP9Q99956 384 aaKnown RBP8.62□□□□□ -1.03
VPS13C-208ENST00000559119 TRAIPQ9BWF2 469 aa8.62□□□□□ -1.03
VPS13C-208ENST00000559119 MIR1-1HGQ9H1L0 117 aa8.62□□□□□ -1.03
VPS13C-208ENST00000559119 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.62□□□□□ -1.03
VPS13C-208ENST00000559119 ST14Q9Y5Y6 855 aa8.62□□□□□ -1.03
VPS13C-208ENST00000559119 TACC3Q9Y6A5 838 aa8.62□□□□□ -1.03
VPS13C-208ENST00000559119 GFRA2O00451 464 aa8.61□□□□□ -1.03
VPS13C-208ENST00000559119 PGRP06401 933 aa8.61□□□□□ -1.03
VPS13C-208ENST00000559119 KIR3DL1P43629 444 aa8.61□□□□□ -1.03
VPS13C-208ENST00000559119 LIG3P49916 1009 aa8.61□□□□□ -1.03
VPS13C-208ENST00000559119 EAPPQ56P03 285 aaPredicted RBP8.61□□□□□ -1.03
VPS13C-208ENST00000559119 FYB2Q5VWT5 728 aa8.61□□□□□ -1.03
VPS13C-208ENST00000559119 MPZL3Q6UWV2 235 aa8.61□□□□□ -1.03
VPS13C-208ENST00000559119 AGMOQ6ZNB7 445 aa8.61□□□□□ -1.03
VPS13C-208ENST00000559119 CCDC120Q96HB5 630 aa8.61□□□□□ -1.03
VPS13C-208ENST00000559119 GLI1P08151 1106 aa8.6□□□□□ -1.03
VPS13C-208ENST00000559119 MESP2Q0VG99 397 aa8.6□□□□□ -1.03
VPS13C-208ENST00000559119 TMEM67Q5HYA8 995 aa8.6□□□□□ -1.03
VPS13C-208ENST00000559119 DIEXFQ68CQ4 756 aaKnown RBP8.6□□□□□ -1.03
VPS13C-208ENST00000559119 CDH24Q86UP0 819 aa8.6□□□□□ -1.03
VPS13C-208ENST00000559119 UBE2FQ969M7 185 aa8.6□□□□□ -1.03
VPS13C-208ENST00000559119 LIN37Q96GY3 246 aaPredicted RBP8.6□□□□□ -1.03
VPS13C-208ENST00000559119 GDNFP39905 211 aa8.59□□□□□ -1.03
VPS13C-208ENST00000559119 PDE4BQ07343 736 aa8.59□□□□□ -1.03
VPS13C-208ENST00000559119 BHLHE22Q8NFJ8 381 aaPredicted RBP8.59□□□□□ -1.03
VPS13C-208ENST00000559119 ZSWIM5Q9P217 1185 aa8.59□□□□□ -1.03
VPS13C-208ENST00000559119 TJP2Q9UDY2 1190 aa8.59□□□□□ -1.03
VPS13C-208ENST00000559119 ANKRD33BA6NCL7 494 aa8.58□□□□□ -1.04
VPS13C-208ENST00000559119 RLBP1P12271 317 aa8.58□□□□□ -1.04
VPS13C-208ENST00000559119 ETV3P41162 512 aa8.58□□□□□ -1.04
VPS13C-208ENST00000559119 TSNAXIP1Q2TAA8 658 aa8.58□□□□□ -1.04
VPS13C-208ENST00000559119 SLC6A19Q695T7 634 aa8.58□□□□□ -1.04
VPS13C-208ENST00000559119 MRPL41Q8IXM3 137 aaKnown RBP8.58□□□□□ -1.04
VPS13C-208ENST00000559119 ALPK1Q96QP1 1244 aa8.58□□□□□ -1.04
VPS13C-208ENST00000559119 DPH2Q9BQC3 489 aaPredicted RBP8.58□□□□□ -1.04
VPS13C-208ENST00000559119 RNF19AQ9NV58 838 aa8.58□□□□□ -1.04
VPS13C-208ENST00000559119 TNK2Q07912 1038 aa8.57□□□□□ -1.04
VPS13C-208ENST00000559119 MEI1Q5TIA1 1274 aa8.57□□□□□ -1.04
VPS13C-208ENST00000559119 JARID2Q92833 1246 aaPredicted RBP8.57□□□□□ -1.04
VPS13C-208ENST00000559119 TMEM87BQ96K49 555 aa8.57□□□□□ -1.04
VPS13C-208ENST00000559119 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.56□□□□□ -1.04
VPS13C-208ENST00000559119 PIWIL2Q8TC59 973 aaKnown RBP8.56□□□□□ -1.04
VPS13C-208ENST00000559119 C19orf73Q9NVV2 129 aa8.56□□□□□ -1.04
VPS13C-208ENST00000559119 SLAMF8Q9P0V8 285 aa8.56□□□□□ -1.04
VPS13C-208ENST00000559119 TFE3P19532 575 aaPredicted RBP8.55□□□□□ -1.04
VPS13C-208ENST00000559119 RPL6Q02878 288 aaKnown RBP8.55□□□□□ -1.04
VPS13C-208ENST00000559119 LCE1DQ5T752 114 aa8.55□□□□□ -1.04
VPS13C-208ENST00000559119 PRR23BQ6ZRT6 265 aa8.55□□□□□ -1.04
VPS13C-208ENST00000559119 TMPRSS7Q7RTY8 843 aa8.55□□□□□ -1.04
VPS13C-208ENST00000559119 PPP1R16BQ96T49 567 aa8.55□□□□□ -1.04
VPS13C-208ENST00000559119 ADAM30Q9UKF2 790 aa8.55□□□□□ -1.04
VPS13C-208ENST00000559119 RAC2P15153 192 aa8.54□□□□□ -1.04
VPS13C-208ENST00000559119 RAP1GAPP47736 663 aa8.54□□□□□ -1.04
VPS13C-208ENST00000559119 PSMD2Q13200 908 aa8.54□□□□□ -1.04
VPS13C-208ENST00000559119 TAF1CQ15572 869 aaPredicted RBP8.54□□□□□ -1.04
VPS13C-208ENST00000559119 TTC6Q86TZ1 520 aa8.54□□□□□ -1.04
VPS13C-208ENST00000559119 MCATQ8IVS2 390 aaKnown RBP8.54□□□□□ -1.04
VPS13C-208ENST00000559119 PARP2Q9UGN5 583 aa8.54□□□□□ -1.04
VPS13C-208ENST00000559119 TLR6Q9Y2C9 796 aa8.54□□□□□ -1.04
VPS13C-208ENST00000559119 SND1Q7KZF4 910 aaKnown RBP eCLIP8.53□□□□□ -1.04
VPS13C-208ENST00000559119 ACSF2Q96CM8 615 aaPredicted RBP8.53□□□□□ -1.04
VPS13C-208ENST00000559119 NOC4LQ9BVI4 516 aaKnown RBP8.53□□□□□ -1.04
VPS13C-208ENST00000559119 BPNT1O95861 308 aa8.52□□□□□ -1.05
VPS13C-208ENST00000559119 ST13P50502 369 aaKnown RBP8.52□□□□□ -1.05
VPS13C-208ENST00000559119 XPCQ01831 940 aaPredicted RBP8.52□□□□□ -1.05
VPS13C-208ENST00000559119 SYDE1Q6ZW31 735 aaPredicted RBP8.52□□□□□ -1.05
VPS13C-208ENST00000559119 TRIT1Q9H3H1 467 aaKnown RBP8.52□□□□□ -1.05
VPS13C-208ENST00000559119 CEP131Q9UPN4 1083 aa8.52□□□□□ -1.05
VPS13C-208ENST00000559119 RBAK-RBAKDNI3L0D1 243 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms