RNA–Protein interactions for RNA: ENST00000558155.1

SPG11-208, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-208ENST00000558155 ASCC2Q9H1I8 757 aaPredicted RBP6.45□□□□□ -1.38
SPG11-208ENST00000558155 AS3MTQ9HBK9 375 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 TMOD4Q9NZQ9 345 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 MORF4L1Q9UBU8 362 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 SALL2Q9Y467 1007 aaPredicted RBP6.45□□□□□ -1.38
SPG11-208ENST00000558155 CUL9Q8IWT3 2517 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 PFASO15067 1338 aa6.45□□□□□ -1.38
SPG11-208ENST00000558155 DDX60LQ5H9U9 1706 aaKnown RBP6.45□□□□□ -1.38
SPG11-208ENST00000558155 PTPRFP10586 1907 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 ATRNL1Q5VV63 1379 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 MYH13Q9UKX3 1938 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 C19orf81C9J6K1 198 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 MAP4K4O95819 1239 aaPredicted RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 ZKSCAN1P17029 563 aaPredicted RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 MAPK4P31152 587 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 HOXA7P31268 230 aaPredicted RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 CAP2P40123 477 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 RGS2P41220 211 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 HMGCS2P54868 508 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 IRX3P78415 501 aaPredicted RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 CACNB2Q08289 660 aaPredicted RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 ATP2B3Q16720 1220 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 LRRC26Q2I0M4 334 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 CCDC84Q86UT8 332 aaPredicted RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 DZIP1Q86YF9 867 aaKnown RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 SOCS4Q8WXH5 440 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 P2RX7Q99572 595 aaKnown RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 CDX2Q99626 313 aaPredicted RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 SENP6Q9GZR1 1112 aaPredicted RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 SEMA6BQ9H3T3 888 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 CWC22Q9HCG8 908 aaKnown RBP6.44□□□□□ -1.38
SPG11-208ENST00000558155 ABCF2Q9UG63 623 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 GAKO14976 1311 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 BRCA2P51587 3418 aa6.44□□□□□ -1.38
SPG11-208ENST00000558155 PHIPQ8WWQ0 1821 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 GPR75-ASB3A0A0A6YYF3 556 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 MSCO60682 206 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 GLRX3O76003 335 aaKnown RBP6.43□□□□□ -1.38
SPG11-208ENST00000558155 CIAO1O76071 339 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 SLURP2P0DP57 97 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 CCND3P30281 292 aaPredicted RBP6.43□□□□□ -1.38
SPG11-208ENST00000558155 BTDP43251 543 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 RFX5P48382 616 aaPredicted RBP6.43□□□□□ -1.38
SPG11-208ENST00000558155 BACE1P56817 501 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 GSTO1P78417 241 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 MFSD14CQ5VZR4 134 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 ERICH6Q7L0X2 663 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 ATG9AQ7Z3C6 839 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 PLEKHH3Q7Z736 793 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 MAFAQ8NHW3 353 aaPredicted RBP6.43□□□□□ -1.38
SPG11-208ENST00000558155 GTF3C2Q8WUA4 911 aaPredicted RBP6.43□□□□□ -1.38
SPG11-208ENST00000558155 RNF166Q96A37 237 aaPredicted RBP6.43□□□□□ -1.38
SPG11-208ENST00000558155 EDC3Q96F86 508 aaKnown RBP6.43□□□□□ -1.38
SPG11-208ENST00000558155 WDR18Q9BV38 432 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 USP44Q9H0E7 712 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 DDX4Q9NQI0 724 aaKnown RBP6.43□□□□□ -1.38
SPG11-208ENST00000558155 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.43□□□□□ -1.38
SPG11-208ENST00000558155 HDAC5Q9UQL6 1122 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 DOCK2Q92608 1830 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 DOCK1Q14185 1865 aa6.43□□□□□ -1.38
SPG11-208ENST00000558155 IL15P40933 162 aaPredicted RBP6.42□□□□□ -1.38
SPG11-208ENST00000558155 PHKA1P46020 1223 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 HERVK_113P62684 666 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 Q3C1V9 767 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 VARS2Q5ST30 1063 aaKnown RBP6.42□□□□□ -1.38
SPG11-208ENST00000558155 CCDC102BQ68D86 513 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 GPR142Q7Z601 462 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 FOXP4Q8IVH2 680 aaPredicted RBP6.42□□□□□ -1.38
SPG11-208ENST00000558155 USP6NLQ92738 828 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 SIL1Q9H173 461 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 DHX36Q9H2U1 1008 aaKnown RBP6.42□□□□□ -1.38
SPG11-208ENST00000558155 GINM1Q9NU53 330 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 PI4KBQ9UBF8 816 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 RBPJLQ9UBG7 517 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 HERC5Q9UII4 1024 aaKnown RBP6.42□□□□□ -1.38
SPG11-208ENST00000558155 MROH7-TTC4A0A0A0MT08 1334 aa6.42□□□□□ -1.38
SPG11-208ENST00000558155 FAM196BA6NMK8 535 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 USP17L10C9JJH3 530 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 ASNSP08243 561 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 COL9A1P20849 921 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 CNGA1P29973 690 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 RHBDL3P58872 404 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 ERVK-9P63128 1117 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 ERVK-24P63145 666 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 CCNA1P78396 465 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 SMAD3P84022 425 aaKnown RBP6.41□□□□□ -1.38
SPG11-208ENST00000558155 ATP2B2Q01814 1243 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 MECOMQ03112 1051 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 MAP2K5Q13163 448 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 MTMR2Q13614 643 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 SHHQ15465 462 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 CCL14Q16627 93 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 CCDC184Q52MB2 194 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 MORN1Q5T089 497 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 IFNLR1Q8IU57 520 aaPredicted RBP6.41□□□□□ -1.38
SPG11-208ENST00000558155 ZNF710Q8N1W2 664 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 MRPL50Q8N5N7 158 aaKnown RBP6.41□□□□□ -1.38
SPG11-208ENST00000558155 ARRDC4Q8NCT1 418 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 LPAR1Q92633 364 aa6.41□□□□□ -1.38
SPG11-208ENST00000558155 APBA2Q99767 749 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms