RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 DIEXFQ68CQ4 756 aaKnown RBP5.3□□□□□ -1.56
VPS13C-205ENST00000558088 LETMD1Q6P1Q0 360 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 LRFN4Q6PJG9 635 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 SYDE1Q6ZW31 735 aaPredicted RBP5.3□□□□□ -1.56
VPS13C-205ENST00000558088 ERICH6Q7L0X2 663 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 THAP5Q7Z6K1 395 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 HID1Q8IV36 788 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 PLPPR2Q96GM1 343 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 KRTAP17-1Q9BYP8 105 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 OSBPL7Q9BZF2 842 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 WNT10AQ9GZT5 417 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 C12orf49Q9H741 205 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 TTF2Q9UNY4 1162 aaKnown RBP5.3□□□□□ -1.56
VPS13C-205ENST00000558088 SNCAIPQ9Y6H5 919 aa5.3□□□□□ -1.56
VPS13C-205ENST00000558088 CBX7O95931 251 aa5.29□□□□□ -1.56
VPS13C-205ENST00000558088 USP17L7P0C7H9 530 aa5.29□□□□□ -1.56
VPS13C-205ENST00000558088 CAP2P40123 477 aa5.29□□□□□ -1.56
VPS13C-205ENST00000558088 FMR1Q06787 632 aaKnown RBP eCLIP5.29□□□□□ -1.56
VPS13C-205ENST00000558088 WIPI1Q5MNZ9 446 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-205ENST00000558088 SV2BQ7L1I2 683 aa5.29□□□□□ -1.56
VPS13C-205ENST00000558088 LRRC56Q8IYG6 542 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-205ENST00000558088 FBXO15Q8NCQ5 510 aaPredicted RBP5.29□□□□□ -1.56
VPS13C-205ENST00000558088 ALPK1Q96QP1 1244 aa5.29□□□□□ -1.56
VPS13C-205ENST00000558088 PRR33A8MZF0 331 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 KIR3DL1P43629 444 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 SLBPQ14493 270 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS13C-205ENST00000558088 INPP5AQ14642 412 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 PRR23BQ6ZRT6 265 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 FRMD6Q96NE9 622 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 DIRC2Q96SL1 478 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 NSUN3Q9H649 340 aaKnown RBP5.28□□□□□ -1.56
VPS13C-205ENST00000558088 FBRSQ9HAH7 460 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 SEMA3GQ9NS98 782 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 SLAMF8Q9P0V8 285 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 CAPN6Q9Y6Q1 641 aa5.28□□□□□ -1.56
VPS13C-205ENST00000558088 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.27□□□□□ -1.57
VPS13C-205ENST00000558088 RASIP1Q5U651 963 aa5.27□□□□□ -1.57
VPS13C-205ENST00000558088 TTBK2Q6IQ55 1244 aa5.27□□□□□ -1.57
VPS13C-205ENST00000558088 XAGE3Q8WTP9 111 aa5.27□□□□□ -1.57
VPS13C-205ENST00000558088 UBE2FQ969M7 185 aa5.27□□□□□ -1.57
VPS13C-205ENST00000558088 ASB16Q96NS5 453 aa5.27□□□□□ -1.57
VPS13C-205ENST00000558088 ZSWIM5Q9P217 1185 aa5.27□□□□□ -1.57
VPS13C-205ENST00000558088 CST3P01034 146 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-205ENST00000558088 TMEM253P0C7T8 217 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 CFPP27918 469 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 GRK4P32298 578 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 ETV3P41162 512 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 NKG7Q16617 165 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 PRAMEF13Q5VWM6 474 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 TMPRSS7Q7RTY8 843 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 TTC6Q86TZ1 520 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 ABHD4Q8TB40 342 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 EPB41L4BQ9H329 900 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 DCP1AQ9NPI6 582 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-205ENST00000558088 ST14Q9Y5Y6 855 aa5.26□□□□□ -1.57
VPS13C-205ENST00000558088 LDHBP07195 334 aaKnown RBP5.25□□□□□ -1.57
VPS13C-205ENST00000558088 ZSCAN22P10073 491 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-205ENST00000558088 EIF4BP23588 611 aaKnown RBP5.25□□□□□ -1.57
VPS13C-205ENST00000558088 RPS26P62854 115 aaKnown RBP5.25□□□□□ -1.57
VPS13C-205ENST00000558088 PTPN11Q06124 597 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-205ENST00000558088 CCDC85BQ15834 202 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-205ENST00000558088 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-205ENST00000558088 SIAH1Q8IUQ4 282 aa5.25□□□□□ -1.57
VPS13C-205ENST00000558088 PIWIL2Q8TC59 973 aaKnown RBP5.25□□□□□ -1.57
VPS13C-205ENST00000558088 GAL3ST3Q96A11 431 aa5.25□□□□□ -1.57
VPS13C-205ENST00000558088 SETDB2Q96T68 719 aa5.25□□□□□ -1.57
VPS13C-205ENST00000558088 C19orf73Q9NVV2 129 aa5.25□□□□□ -1.57
VPS13C-205ENST00000558088 WWC3Q9ULE0 1092 aa5.25□□□□□ -1.57
VPS13C-205ENST00000558088 TACC3Q9Y6A5 838 aa5.25□□□□□ -1.57
VPS13C-205ENST00000558088 PDE4BQ07343 736 aa5.24□□□□□ -1.57
VPS13C-205ENST00000558088 MYLIPQ8WY64 445 aa5.24□□□□□ -1.57
VPS13C-205ENST00000558088 SYTL4Q96C24 671 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-205ENST00000558088 TRIT1Q9H3H1 467 aaKnown RBP5.24□□□□□ -1.57
VPS13C-205ENST00000558088 TMEM59LQ9UK28 342 aa5.24□□□□□ -1.57
VPS13C-205ENST00000558088 TCAF2A6NFQ2 919 aa5.23□□□□□ -1.57
VPS13C-205ENST00000558088 SUPT5HO00267 1087 aaKnown RBP5.23□□□□□ -1.57
VPS13C-205ENST00000558088 PGRP06401 933 aa5.23□□□□□ -1.57
VPS13C-205ENST00000558088 C1QTNF9P0C862 333 aa5.23□□□□□ -1.57
VPS13C-205ENST00000558088 GNA15P30679 374 aa5.23□□□□□ -1.57
VPS13C-205ENST00000558088 HK2P52789 917 aa5.23□□□□□ -1.57
VPS13C-205ENST00000558088 CIAPIN1Q6FI81 312 aa5.23□□□□□ -1.57
VPS13C-205ENST00000558088 CDH24Q86UP0 819 aa5.23□□□□□ -1.57
VPS13C-205ENST00000558088 RIN3Q8TB24 985 aa5.23□□□□□ -1.57
VPS13C-205ENST00000558088 MIR1-1HGQ9H1L0 117 aa5.23□□□□□ -1.57
VPS13C-205ENST00000558088 NPIPB6E9PJ23 425 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 P4HBP07237 508 aaKnown RBP5.22□□□□□ -1.57
VPS13C-205ENST00000558088 TNK2Q07912 1038 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 SEPT6Q14141 434 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 LCE4AQ5TA78 99 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 CREG2Q8IUH2 290 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 CILP2Q8IUL8 1156 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 MRPL41Q8IXM3 137 aaKnown RBP5.22□□□□□ -1.57
VPS13C-205ENST00000558088 TMEM87BQ96K49 555 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 SLC26A8Q96RN1 970 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 DPH2Q9BQC3 489 aaPredicted RBP5.22□□□□□ -1.57
VPS13C-205ENST00000558088 GPATCH2Q9NW75 528 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 IVNS1ABPQ9Y6Y0 642 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 CNTNAP4Q9C0A0 1308 aa5.22□□□□□ -1.57
VPS13C-205ENST00000558088 DNAJC25-GNG10A0A024R161 153 aa5.21□□□□□ -1.58
VPS13C-205ENST00000558088 RLBP1P12271 317 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms