RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 CASC4Q6P4E1 433 aa9.74□□□□□ -0.85
SYNE3-205ENST00000557275 DBF4Q9UBU7 674 aaPredicted RBP9.74□□□□□ -0.85
SYNE3-205ENST00000557275 TMEM247A6NEH6 219 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 C4BPBP20851 252 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 PPP2R5BQ15173 497 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 NBPF10Q6P3W6 841 aaKnown RBP9.73□□□□□ -0.85
SYNE3-205ENST00000557275 CD2APQ9Y5K6 639 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 ATP8B1O43520 1251 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 PEX19P40855 299 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 LCA5Q86VQ0 697 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 TBC1D32Q96NH3 1257 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 PNMA2Q9UL42 364 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 ARHGAP18Q8N392 663 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 OR9Q1Q8NGQ5 310 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 TRIM8Q9BZR9 551 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 KRT10P13645 584 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 CTNNA1P35221 906 aaKnown RBP9.73□□□□□ -0.85
SYNE3-205ENST00000557275 GUCY1B3Q02153 619 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 ENAHQ8N8S7 591 aaPredicted RBP9.73□□□□□ -0.85
SYNE3-205ENST00000557275 ALG1Q9BT22 464 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 APOA1P02647 267 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 CAPS2Q9BXY5 557 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 SYNRGQ9UMZ2 1314 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 IL9RQ01113 521 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 DDX41Q9UJV9 622 aaKnown RBP9.73□□□□□ -0.85
SYNE3-205ENST00000557275 PAIP2BQ9ULR5 123 aaKnown RBP9.73□□□□□ -0.85
SYNE3-205ENST00000557275 PIK3R4Q99570 1358 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 SRGAP2BP0DMP2 458 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 SV2BQ7L1I2 683 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 CAPN7Q9Y6W3 813 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 SMARCA4P51532 1647 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 CFAP61Q8NHU2 1237 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 STX8Q9UNK0 236 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 TMED1Q13445 227 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 TEDDM1Q5T9Z0 273 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 DCUN1D2Q6PH85 259 aa9.73□□□□□ -0.85
SYNE3-205ENST00000557275 PATL1Q86TB9 770 aaKnown RBP9.73□□□□□ -0.85
SYNE3-205ENST00000557275 EPRSP07814 1512 aaKnown RBP9.72□□□□□ -0.85
SYNE3-205ENST00000557275 RSAD2Q8WXG1 361 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 RNF34Q969K3 372 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 OLFM3Q96PB7 478 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 RPS6KC1Q96S38 1066 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 FAM96AQ9H5X1 160 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 TTC21BQ7Z4L5 1316 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 ARHGAP10A1A4S6 786 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 S100BP04271 92 aaPredicted RBP9.72□□□□□ -0.85
SYNE3-205ENST00000557275 KRT5P13647 590 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 SULT6B1Q6IMI4 303 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 NAPAP54920 295 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 GIPC2Q8TF65 315 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 PALM2Q8IXS6 379 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 MID2Q9UJV3 735 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 ARHGAP26Q9UNA1 814 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 STX1BP61266 288 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 RIOK1Q9BRS2 568 aaKnown RBP9.72□□□□□ -0.85
SYNE3-205ENST00000557275 ACTR5Q9H9F9 607 aaPredicted RBP9.72□□□□□ -0.85
SYNE3-205ENST00000557275 STK38LQ9Y2H1 464 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 AFMP43652 599 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 LMOD1P29536 600 aaPredicted RBP9.72□□□□□ -0.85
SYNE3-205ENST00000557275 RPS6KA1Q15418 735 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 SLC38A10Q9HBR0 1119 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 N4BP1O75113 896 aaKnown RBP9.72□□□□□ -0.85
SYNE3-205ENST00000557275 FLOT2Q14254 428 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 PEX26Q7Z412 305 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 SLC13A4Q9UKG4 626 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 FAM177BA6PVY3 158 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 ATP5HO75947 161 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 STRN3Q13033 797 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 MPP6Q9NZW5 540 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 GNGT2O14610 69 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 PDE6AP16499 860 aa9.72□□□□□ -0.85
SYNE3-205ENST00000557275 NUTM2BA6NNL0 878 aaPredicted RBP9.71□□□□□ -0.85
SYNE3-205ENST00000557275 NUTM2EB1AL46 878 aaPredicted RBP9.71□□□□□ -0.85
SYNE3-205ENST00000557275 MAP3K7O43318 606 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 PSMA3P25788 255 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 NACA2Q9H009 215 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 GGNBP2Q9H3C7 697 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 ASIC2Q16515 512 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 SIRT1Q96EB6 747 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 VPS37BQ9H9H4 285 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 MRGBPQ9NV56 204 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 RTEL1-TNFRSF6BF6WH68 1400 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 NFKBIAP25963 317 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 SND1Q7KZF4 910 aaKnown RBP eCLIP9.71□□□□□ -0.85
SYNE3-205ENST00000557275 DDX42Q86XP3 938 aaKnown RBP eCLIP9.71□□□□□ -0.85
SYNE3-205ENST00000557275 RMDN2Q96LZ7 410 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 C11orf95C9JLR9 678 aaPredicted RBP9.71□□□□□ -0.85
SYNE3-205ENST00000557275 MCF2P10911 925 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 PPP1R42Q7Z4L9 355 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 NUDCD3Q8IVD9 361 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 IGSF22Q8N9C0 903 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 ENOX1Q8TC92 643 aaKnown RBP9.71□□□□□ -0.85
SYNE3-205ENST00000557275 MTBPQ96DY7 904 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 EXOC6BQ9Y2D4 811 aa9.71□□□□□ -0.85
SYNE3-205ENST00000557275 HNRNPRO43390 633 aaKnown RBP9.71□□□□□ -0.86
SYNE3-205ENST00000557275 ABCD1P33897 745 aa9.71□□□□□ -0.86
SYNE3-205ENST00000557275 CCT2P78371 535 aaKnown RBP9.71□□□□□ -0.86
SYNE3-205ENST00000557275 GIMAP6Q6P9H5 292 aa9.71□□□□□ -0.86
SYNE3-205ENST00000557275 LRRC8CQ8TDW0 803 aa9.71□□□□□ -0.86
SYNE3-205ENST00000557275 TMOD3Q9NYL9 352 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms