RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 GH2P01242 217 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 SLC3A2P08195 630 aaKnown RBP13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 ASNSP08243 561 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 CHMLP26374 656 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 SHMT1P34896 483 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 CDK8P49336 464 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 GABPAQ06546 454 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 SNAPC2Q13487 334 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 CCL15Q16663 113 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 ABCB5Q2M3G0 1257 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 BMP2KLQ5H9B9 411 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 TATDN1Q6P1N9 297 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 AS3MTQ9HBK9 375 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 WBP1LQ9NX94 342 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 ZBTB21Q9ULJ3 1066 aa13.66□□□□□ -0.22
CCDC88C-212ENST00000556767 ATAD5Q96QE3 1844 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 TRIM75PA6NK02 468 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 USP17L5A8MUK1 530 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 HSPD1P10809 573 aaKnown RBP13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 CETPP11597 493 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 TM4SF4P48230 202 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 INHBEP58166 350 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 JAG1P78504 1218 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 PPARAQ07869 468 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 RAB3GAP1Q15042 981 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 SHROOM1Q2M3G4 852 aaPredicted RBP13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 OTUD7BQ6GQQ9 843 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 C16orf86Q6ZW13 317 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 MKNK2Q9HBH9 465 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 TSKSQ9UJT2 592 aa13.65□□□□□ -0.22
CCDC88C-212ENST00000556767 CXCL11O14625 94 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 FOXP2O15409 715 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 TRPA1O75762 1119 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 SPP2Q13103 211 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 ZNF280CQ8ND82 737 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 BRI3BPQ8WY22 251 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 MS4A4AQ96JQ5 239 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 ZNF287Q9HBT7 754 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 GINM1Q9NU53 330 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 RNF186Q9NXI6 227 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 TAOK2Q9UL54 1235 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 MYH8P13535 1937 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 RAD50Q92878 1312 aa13.64□□□□□ -0.23
CCDC88C-212ENST00000556767 PRDM1O75626 825 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 FGAP02671 866 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 AKR1B1P15121 316 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 CTDSPL2Q05D32 466 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 PDE4BQ07343 736 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 GADL1Q6ZQY3 521 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 IFNL1Q8IU54 200 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 ZNF444Q8N0Y2 327 aaPredicted RBP13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 TBC1D2Q9BYX2 928 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 KCNH4Q9UQ05 1017 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 AFG3L2Q9Y4W6 797 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 LAMB1P07942 1786 aa13.63□□□□□ -0.23
CCDC88C-212ENST00000556767 IGF2BP3O00425 579 aaKnown RBP eCLIP13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 FOXN1O15353 648 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 CA12O43570 354 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 ALDH1A1P00352 501 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 HAND2P61296 217 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 SEPT2Q15019 361 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 ALX1Q15699 326 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 CASC1Q6TDU7 716 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 CCDC17Q96LX7 622 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 FEZ1Q99689 392 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 PTPN18Q99952 460 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 IL25Q9H293 177 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 TOMM22Q9NS69 142 aa13.62□□□□□ -0.23
CCDC88C-212ENST00000556767 ROBO3Q96MS0 1386 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 TESPA1A2RU30 521 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 CDC45O75419 566 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 TBC1D8O95759 1140 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 CTCFP49711 727 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 HMGCS2P54868 508 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 ATP2B2Q01814 1243 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 MTMR2Q13614 643 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 KIAA1211Q6ZU35 1233 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 TMEM179Q6ZVK1 233 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 FASTKD5Q7L8L6 764 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 FAM43AQ8N2R8 423 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 WDR18Q9BV38 432 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 DSCC1Q9BVC3 393 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 TMOD4Q9NZQ9 345 aa13.61□□□□□ -0.23
CCDC88C-212ENST00000556767 PHIPQ8WWQ0 1821 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 A0A0G2JLL6 359 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 BTBD19C9JJ37 291 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 USP17L10C9JJH3 530 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 ZNF213O14771 459 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 SGSM2O43147 1006 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 RASA1P20936 1047 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 GUCY1A2P33402 732 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 BACE1P56817 501 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 TAF1CQ15572 869 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 ZYXQ15942 572 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 RRP12Q5JTH9 1297 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 PRRT2Q7Z6L0 340 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 INCENPQ9NQS7 918 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 SAGE1Q9NXZ1 904 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 CTNNA3Q9UI47 895 aa13.6□□□□□ -0.23
CCDC88C-212ENST00000556767 ZMYM6O95789 1325 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms