RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 FAM83AQ86UY5 434 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 MRPL50Q8N5N7 158 aaKnown RBP12.53□□□□□ -0.4
SCFD1-220ENST00000556486 ANKRD44Q8N8A2 993 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 TBC1D22AQ8WUA7 517 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 ZDHHC15Q96MV8 337 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 TRAIPQ9BWF2 469 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 MRIQ9BWK5 157 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 COL25A1Q9BXS0 654 aaPredicted RBP12.53□□□□□ -0.4
SCFD1-220ENST00000556486 BICC1Q9H694 974 aaKnown RBP12.53□□□□□ -0.4
SCFD1-220ENST00000556486 DDX60LQ5H9U9 1706 aaKnown RBP12.53□□□□□ -0.4
SCFD1-220ENST00000556486 DOCK3Q8IZD9 2030 aa12.52□□□□□ -0.4
SCFD1-220ENST00000556486 TNPO2O14787 897 aaKnown RBP12.52□□□□□ -0.41
SCFD1-220ENST00000556486 PDE8BO95263 885 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 OATP04181 439 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 METTL3Q86U44 580 aaKnown RBP12.52□□□□□ -0.41
SCFD1-220ENST00000556486 CCDC84Q86UT8 332 aaPredicted RBP12.52□□□□□ -0.41
SCFD1-220ENST00000556486 ZFPM1Q8IX07 1006 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 FAM9BQ8IZU0 186 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 KLHDC4Q8TBB5 520 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 GDF15Q99988 308 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 COG6Q9Y2V7 657 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 SUGT1Q9Y2Z0 365 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 PCDHGA10Q9Y5H3 936 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 DOCK2Q92608 1830 aa12.52□□□□□ -0.41
SCFD1-220ENST00000556486 PTPRFP10586 1907 aa12.51□□□□□ -0.41
SCFD1-220ENST00000556486 E9PSI1 815 aa12.51□□□□□ -0.41
SCFD1-220ENST00000556486 MAGEA10P43363 369 aaPredicted RBP12.51□□□□□ -0.41
SCFD1-220ENST00000556486 TRIM32Q13049 653 aa12.51□□□□□ -0.41
SCFD1-220ENST00000556486 METTL24Q5JXM2 366 aa12.51□□□□□ -0.41
SCFD1-220ENST00000556486 FKBP1CQ5VVH2 108 aa12.51□□□□□ -0.41
SCFD1-220ENST00000556486 HOOK2Q96ED9 719 aa12.51□□□□□ -0.41
SCFD1-220ENST00000556486 USP44Q9H0E7 712 aa12.51□□□□□ -0.41
SCFD1-220ENST00000556486 RPAP1Q9BWH6 1393 aaPredicted RBP12.51□□□□□ -0.41
SCFD1-220ENST00000556486 VCANP13611 3396 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 FGFR2P21802 821 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 CLK2P49760 499 aaKnown RBP12.5□□□□□ -0.41
SCFD1-220ENST00000556486 CAVIN4Q5BKX8 364 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 TYW1BQ6NUM6 668 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 CDC42EP5Q6NZY7 148 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 NECAB2Q7Z6G3 386 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 ANKRD13CQ8N6S4 541 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 BANK1Q8NDB2 785 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 SMCR8Q8TEV9 937 aaPredicted RBP12.5□□□□□ -0.41
SCFD1-220ENST00000556486 FAM151AQ8WW52 585 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 NLRP7Q8WX94 980 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 FAM161BQ96MY7 647 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 PAK6Q9NQU5 681 aaPredicted RBP12.5□□□□□ -0.41
SCFD1-220ENST00000556486 MTMR10Q9NXD2 777 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 ZNF112Q9UJU3 913 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 DAGLAQ9Y4D2 1042 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 ZHX2Q9Y6X8 837 aa12.5□□□□□ -0.41
SCFD1-220ENST00000556486 PHIPQ8WWQ0 1821 aa12.49□□□□□ -0.41
SCFD1-220ENST00000556486 TRIM75PA6NK02 468 aa12.49□□□□□ -0.41
SCFD1-220ENST00000556486 ALDH1L2Q3SY69 923 aa12.49□□□□□ -0.41
SCFD1-220ENST00000556486 SSH1Q8WYL5 1049 aa12.49□□□□□ -0.41
SCFD1-220ENST00000556486 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.49□□□□□ -0.41
SCFD1-220ENST00000556486 FAM198AQ9UFP1 575 aa12.49□□□□□ -0.41
SCFD1-220ENST00000556486 STXBP5LQ9Y2K9 1186 aa12.49□□□□□ -0.41
SCFD1-220ENST00000556486 MAST3O60307 1309 aa12.48□□□□□ -0.41
SCFD1-220ENST00000556486 DNAH12Q6ZR08 3092 aa12.48□□□□□ -0.41
SCFD1-220ENST00000556486 A0A0G2JLL6 359 aaPredicted RBP12.48□□□□□ -0.41
SCFD1-220ENST00000556486 NUDT7P0C024 238 aa12.48□□□□□ -0.41
SCFD1-220ENST00000556486 RFX5P48382 616 aaPredicted RBP12.48□□□□□ -0.41
SCFD1-220ENST00000556486 SLFN5Q08AF3 891 aa12.48□□□□□ -0.41
SCFD1-220ENST00000556486 PUM3Q15397 648 aaKnown RBP12.48□□□□□ -0.41
SCFD1-220ENST00000556486 VARS2Q5ST30 1063 aaKnown RBP12.48□□□□□ -0.41
SCFD1-220ENST00000556486 NOL9Q5SY16 702 aaKnown RBP12.48□□□□□ -0.41
SCFD1-220ENST00000556486 HHIPL2Q6UWX4 724 aa12.48□□□□□ -0.41
SCFD1-220ENST00000556486 PRRT2Q7Z6L0 340 aaPredicted RBP12.48□□□□□ -0.41
SCFD1-220ENST00000556486 UBE2OQ9C0C9 1292 aaKnown RBP12.48□□□□□ -0.41
SCFD1-220ENST00000556486 PLSCR2Q9NRY7 297 aa12.48□□□□□ -0.41
SCFD1-220ENST00000556486 DOCK1Q14185 1865 aa12.48□□□□□ -0.41
SCFD1-220ENST00000556486 CT47B1P0C2W7 299 aaPredicted RBP12.47□□□□□ -0.41
SCFD1-220ENST00000556486 PTPRAP18433 802 aa12.47□□□□□ -0.41
SCFD1-220ENST00000556486 PRDX5P30044 214 aa12.47□□□□□ -0.41
SCFD1-220ENST00000556486 RFC5P40937 340 aa12.47□□□□□ -0.41
SCFD1-220ENST00000556486 TREML2Q5T2D2 321 aa12.47□□□□□ -0.41
SCFD1-220ENST00000556486 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.47□□□□□ -0.41
SCFD1-220ENST00000556486 TRMT2AQ8IZ69 625 aaKnown RBP12.47□□□□□ -0.41
SCFD1-220ENST00000556486 TDHQ8IZJ6 230 aa12.47□□□□□ -0.41
SCFD1-220ENST00000556486 PXYLP1Q8TE99 480 aa12.47□□□□□ -0.41
SCFD1-220ENST00000556486 PICK1Q9NRD5 415 aa12.47□□□□□ -0.41
SCFD1-220ENST00000556486 SNRKQ9NRH2 765 aa12.47□□□□□ -0.41
SCFD1-220ENST00000556486 USP40Q9NVE5 1235 aa12.47□□□□□ -0.41
SCFD1-220ENST00000556486 PHF20L1A8MW92 1017 aa12.46□□□□□ -0.41
SCFD1-220ENST00000556486 EYA2O00167 538 aa12.46□□□□□ -0.41
SCFD1-220ENST00000556486 CXCL11O14625 94 aa12.46□□□□□ -0.41
SCFD1-220ENST00000556486 PEX10O60683 326 aa12.46□□□□□ -0.41
SCFD1-220ENST00000556486 IFIT1P09914 478 aaKnown RBP12.46□□□□□ -0.41
SCFD1-220ENST00000556486 BMP8BP34820 402 aa12.46□□□□□ -0.41
SCFD1-220ENST00000556486 ZSCAN29Q8IWY8 852 aaPredicted RBP12.46□□□□□ -0.41
SCFD1-220ENST00000556486 SCYL3Q8IZE3 742 aa12.46□□□□□ -0.41
SCFD1-220ENST00000556486 KCTD17Q8N5Z5 321 aa12.46□□□□□ -0.41
SCFD1-220ENST00000556486 COA7Q96BR5 231 aa12.46□□□□□ -0.41
SCFD1-220ENST00000556486 AFG3L2Q9Y4W6 797 aa12.46□□□□□ -0.41
SCFD1-220ENST00000556486 PRUNE2Q8WUY3 3088 aa12.46□□□□□ -0.42
SCFD1-220ENST00000556486 MYH2Q9UKX2 1941 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 FAM196BA6NMK8 535 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 CIAO1O76071 339 aa12.45□□□□□ -0.42
SCFD1-220ENST00000556486 RGS3P49796 1198 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms