RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 PPM1JQ5JR12 505 aa7.17□□□□□ -1.26
SRP54-211ENST00000556445 PSMG3-AS1Q96PY0 264 aa7.17□□□□□ -1.26
SRP54-211ENST00000556445 PCDHA4Q9UN74 947 aa7.17□□□□□ -1.26
SRP54-211ENST00000556445 PHLDB1Q86UU1 1377 aa7.17□□□□□ -1.26
SRP54-211ENST00000556445 CYP26A1O43174 497 aa7.16□□□□□ -1.26
SRP54-211ENST00000556445 RPS26P62854 115 aaKnown RBP7.16□□□□□ -1.26
SRP54-211ENST00000556445 XPCQ01831 940 aaPredicted RBP7.16□□□□□ -1.26
SRP54-211ENST00000556445 INPP5AQ14642 412 aa7.16□□□□□ -1.26
SRP54-211ENST00000556445 DUSP27Q5VZP5 1158 aa7.16□□□□□ -1.26
SRP54-211ENST00000556445 UBE3DQ7Z6J8 389 aa7.16□□□□□ -1.26
SRP54-211ENST00000556445 C12orf40Q86WS4 652 aa7.16□□□□□ -1.26
SRP54-211ENST00000556445 CWC22Q9HCG8 908 aaKnown RBP7.16□□□□□ -1.26
SRP54-211ENST00000556445 KIAA1522Q9P206 1035 aaPredicted RBP7.16□□□□□ -1.26
SRP54-211ENST00000556445 MYOM3Q5VTT5 1437 aa7.16□□□□□ -1.26
SRP54-211ENST00000556445 FGD6Q6ZV73 1430 aa7.16□□□□□ -1.26
SRP54-211ENST00000556445 FAM87AP0C7U9 286 aa7.15□□□□□ -1.26
SRP54-211ENST00000556445 ST13P50502 369 aaKnown RBP7.15□□□□□ -1.26
SRP54-211ENST00000556445 ZBTB37Q5TC79 503 aa7.15□□□□□ -1.26
SRP54-211ENST00000556445 LRFN4Q6PJG9 635 aa7.15□□□□□ -1.26
SRP54-211ENST00000556445 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.15□□□□□ -1.26
SRP54-211ENST00000556445 AGMOQ6ZNB7 445 aa7.15□□□□□ -1.26
SRP54-211ENST00000556445 MIA2Q96PC5 1412 aa7.15□□□□□ -1.27
SRP54-211ENST00000556445 NCOA2Q15596 1464 aa7.15□□□□□ -1.27
SRP54-211ENST00000556445 LRRIQ1Q96JM4 1722 aa7.15□□□□□ -1.27
SRP54-211ENST00000556445 ARHGEF11O15085 1522 aa7.14□□□□□ -1.27
SRP54-211ENST00000556445 FANCGO15287 622 aa7.14□□□□□ -1.27
SRP54-211ENST00000556445 LEFTY1O75610 366 aa7.14□□□□□ -1.27
SRP54-211ENST00000556445 PRNPP04156 253 aa7.14□□□□□ -1.27
SRP54-211ENST00000556445 LIG3P49916 1009 aa7.14□□□□□ -1.27
SRP54-211ENST00000556445 FAM50AQ14320 339 aaKnown RBP7.14□□□□□ -1.27
SRP54-211ENST00000556445 TAF1CQ15572 869 aaPredicted RBP7.14□□□□□ -1.27
SRP54-211ENST00000556445 NFXL1Q6ZNB6 911 aa7.14□□□□□ -1.27
SRP54-211ENST00000556445 CYFIP1Q7L576 1253 aa7.14□□□□□ -1.27
SRP54-211ENST00000556445 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.14□□□□□ -1.27
SRP54-211ENST00000556445 LRRC4CQ9HCJ2 640 aa7.14□□□□□ -1.27
SRP54-211ENST00000556445 PCDHB5Q9Y5E4 795 aa7.14□□□□□ -1.27
SRP54-211ENST00000556445 CHD1O14646 1710 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 SETD5Q9C0A6 1442 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 USP31Q70CQ4 1352 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 CDK8P49336 464 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 MAP3K11Q16584 847 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 CYP27C1Q4G0S4 372 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 PLPPR2Q96GM1 343 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 CRELD1Q96HD1 420 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 SPATA32Q96LK8 384 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 NOC4LQ9BVI4 516 aaKnown RBP7.13□□□□□ -1.27
SRP54-211ENST00000556445 DUSP23Q9BVJ7 150 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 SSU72Q9NP77 194 aaKnown RBP7.13□□□□□ -1.27
SRP54-211ENST00000556445 ZC3H7BQ9UGR2 993 aaKnown RBP7.13□□□□□ -1.27
SRP54-211ENST00000556445 OAS3Q9Y6K5 1087 aaKnown RBP7.13□□□□□ -1.27
SRP54-211ENST00000556445 U3KQE9 123 aa7.13□□□□□ -1.27
SRP54-211ENST00000556445 NUP153P49790 1475 aaKnown RBP7.12□□□□□ -1.27
SRP54-211ENST00000556445 SORBS3O60504 671 aa7.12□□□□□ -1.27
SRP54-211ENST00000556445 WNT11O96014 354 aa7.12□□□□□ -1.27
SRP54-211ENST00000556445 TFE3P19532 575 aaPredicted RBP7.12□□□□□ -1.27
SRP54-211ENST00000556445 GP2P55259 537 aaKnown RBP7.12□□□□□ -1.27
SRP54-211ENST00000556445 SEPT6Q14141 434 aa7.12□□□□□ -1.27
SRP54-211ENST00000556445 UBE2Q2Q8WVN8 375 aa7.12□□□□□ -1.27
SRP54-211ENST00000556445 ELMO3Q96BJ8 720 aa7.12□□□□□ -1.27
SRP54-211ENST00000556445 MRRFQ96E11 262 aaKnown RBP7.12□□□□□ -1.27
SRP54-211ENST00000556445 CCDC39Q9UFE4 941 aa7.12□□□□□ -1.27
SRP54-211ENST00000556445 TCOF1Q13428 1488 aaKnown RBP7.11□□□□□ -1.27
SRP54-211ENST00000556445 PRG4Q92954 1404 aaPredicted RBP7.11□□□□□ -1.27
SRP54-211ENST00000556445 SMARCA5O60264 1052 aaPredicted RBP7.11□□□□□ -1.27
SRP54-211ENST00000556445 WIPI1Q5MNZ9 446 aaPredicted RBP7.11□□□□□ -1.27
SRP54-211ENST00000556445 TOP6BLQ8N6T0 577 aa7.11□□□□□ -1.27
SRP54-211ENST00000556445 DRC1Q96MC2 740 aa7.11□□□□□ -1.27
SRP54-211ENST00000556445 PICK1Q9NRD5 415 aa7.11□□□□□ -1.27
SRP54-211ENST00000556445 BSDC1Q9NW68 430 aaPredicted RBP7.11□□□□□ -1.27
SRP54-211ENST00000556445 SNCAIPQ9Y6H5 919 aa7.11□□□□□ -1.27
SRP54-211ENST00000556445 SHROOM2Q13796 1616 aa7.11□□□□□ -1.27
SRP54-211ENST00000556445 PTPN23Q9H3S7 1636 aa7.11□□□□□ -1.27
SRP54-211ENST00000556445 CDK13Q14004 1512 aaKnown RBP7.11□□□□□ -1.27
SRP54-211ENST00000556445 PTPRGP23470 1445 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 TROQ12816 1431 aaPredicted RBP7.1□□□□□ -1.27
SRP54-211ENST00000556445 DHX57Q6P158 1386 aaKnown RBP7.1□□□□□ -1.27
SRP54-211ENST00000556445 PRAMEF27A3QJZ7 478 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 PLEKHD1A6NEE1 506 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 GFRA2O00451 464 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 ITGAEP38570 1179 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 FAM214BQ7L5A3 538 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 HDXQ7Z353 690 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 VSIG10LQ86VR7 867 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 FAM181AQ8N9Y4 354 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 PHC3Q8NDX5 983 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 WNT10AQ9GZT5 417 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 FBRSQ9HAH7 460 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 VTI1BQ9UEU0 232 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 TLR6Q9Y2C9 796 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 ABCA8O94911 1581 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 AKNAQ7Z591 1439 aa7.1□□□□□ -1.27
SRP54-211ENST00000556445 ITSN2Q9NZM3 1697 aa7.09□□□□□ -1.27
SRP54-211ENST00000556445 RAB3GAP2Q9H2M9 1393 aa7.09□□□□□ -1.27
SRP54-211ENST00000556445 ADCY10Q96PN6 1610 aa7.09□□□□□ -1.27
SRP54-211ENST00000556445 RLBP1P12271 317 aa7.09□□□□□ -1.27
SRP54-211ENST00000556445 KCT2Q8NC54 265 aa7.09□□□□□ -1.27
SRP54-211ENST00000556445 ZNF507Q8TCN5 953 aa7.09□□□□□ -1.27
SRP54-211ENST00000556445 C8orf37Q96NL8 207 aa7.09□□□□□ -1.27
SRP54-211ENST00000556445 BCL2L13Q9BXK5 485 aa7.09□□□□□ -1.27
SRP54-211ENST00000556445 MRS2Q9HD23 443 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms