RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 CALM2P0DP24 149 aa17.13■□□□□ 0.33
VPS33B-205ENST00000556096 CALM3P0DP25 149 aa17.13■□□□□ 0.33
VPS33B-205ENST00000556096 EVX2Q03828 476 aa17.13■□□□□ 0.33
VPS33B-205ENST00000556096 SSRP1Q08945 709 aaKnown RBP17.13■□□□□ 0.33
VPS33B-205ENST00000556096 IFIT1BQ5T764 474 aaKnown RBP17.13■□□□□ 0.33
VPS33B-205ENST00000556096 CCDC144CPQ8IYA2 1237 aa17.13■□□□□ 0.33
VPS33B-205ENST00000556096 SPATA32Q96LK8 384 aa17.13■□□□□ 0.33
VPS33B-205ENST00000556096 TFIP11Q9UBB9 837 aaKnown RBP17.13■□□□□ 0.33
VPS33B-205ENST00000556096 DAGLAQ9Y4D2 1042 aa17.13■□□□□ 0.33
VPS33B-205ENST00000556096 NAV1Q8NEY1 1877 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 COL4A5P29400 1685 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 MRE11P49959 708 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 FOSBP53539 338 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 GUCY1B3Q02153 619 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 KIAA2012Q0VF49 1180 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 CATIPQ7Z7H3 387 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 MAPKAPK5Q8IW41 473 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 LEO1Q8WVC0 666 aaPredicted RBP17.12■□□□□ 0.33
VPS33B-205ENST00000556096 WASF1Q92558 559 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 ZNF396Q96N95 335 aaPredicted RBP17.12■□□□□ 0.33
VPS33B-205ENST00000556096 ALG1Q9BT22 464 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 RNF181Q9P0P0 153 aa17.12■□□□□ 0.33
VPS33B-205ENST00000556096 PPIP5K2O43314 1243 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 DDAH1O94760 285 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 POLR3DP05423 398 aaPredicted RBP17.11■□□□□ 0.33
VPS33B-205ENST00000556096 CCDC178Q5BJE1 867 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 C9orf131Q5VYM1 1079 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 HHIPL2Q6UWX4 724 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 GAS2L3Q86XJ1 694 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 PHKBQ93100 1093 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 FBXW7Q969H0 707 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 MRIQ9BWK5 157 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 ZNF287Q9HBT7 754 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 SBF1O95248 1867 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 CDK5RAP2Q96SN8 1893 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 FLT1P17948 1338 aa17.11■□□□□ 0.33
VPS33B-205ENST00000556096 TSPY2A6NKD2 308 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 ECE2O60344 883 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 STRIP1Q5VSL9 837 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 BRAPQ7Z569 592 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 CRACR2BQ8N4Y2 399 aaPredicted RBP17.1■□□□□ 0.33
VPS33B-205ENST00000556096 ANKS1AQ92625 1134 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 TCP11L1Q9NUJ3 509 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 TTF2Q9UNY4 1162 aaKnown RBP17.1■□□□□ 0.33
VPS33B-205ENST00000556096 MYH15Q9Y2K3 1946 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 FAM47AQ5JRC9 791 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 OTUD7BQ6GQQ9 843 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 NBPF11Q86T75 865 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 DGKHQ86XP1 1220 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 TRIM22Q8IYM9 498 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 LARGE2Q8N3Y3 721 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 NUP133Q8WUM0 1156 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 SLC26A6Q9BXS9 759 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 MKNK2Q9HBH9 465 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 RBM28Q9NW13 759 aaKnown RBP17.1■□□□□ 0.33
VPS33B-205ENST00000556096 RCOR1Q9UKL0 485 aa17.1■□□□□ 0.33
VPS33B-205ENST00000556096 DDX60LQ5H9U9 1706 aaKnown RBP17.09■□□□□ 0.33
VPS33B-205ENST00000556096 LMNB1P20700 586 aa17.09■□□□□ 0.33
VPS33B-205ENST00000556096 PLCD1P51178 756 aa17.09■□□□□ 0.33
VPS33B-205ENST00000556096 TFAP4Q01664 338 aa17.09■□□□□ 0.33
VPS33B-205ENST00000556096 TROAPQ12815 778 aa17.09■□□□□ 0.33
VPS33B-205ENST00000556096 C16orf86Q6ZW13 317 aa17.09■□□□□ 0.33
VPS33B-205ENST00000556096 DYNLL2Q96FJ2 89 aa17.09■□□□□ 0.33
VPS33B-205ENST00000556096 GRPEL1Q9HAV7 217 aa17.09■□□□□ 0.33
VPS33B-205ENST00000556096 KCNQ5Q9NR82 932 aa17.09■□□□□ 0.33
VPS33B-205ENST00000556096 LTBP3Q9NS15 1303 aa17.08■□□□□ 0.33
VPS33B-205ENST00000556096 FOCADQ5VW36 1801 aa17.08■□□□□ 0.33
VPS33B-205ENST00000556096 LETM1O95202 739 aaPredicted RBP17.08■□□□□ 0.32
VPS33B-205ENST00000556096 KIF23Q02241 960 aaPredicted RBP17.08■□□□□ 0.32
VPS33B-205ENST00000556096 CCDC183Q5T5S1 534 aa17.08■□□□□ 0.32
VPS33B-205ENST00000556096 KRT40Q6A162 431 aa17.08■□□□□ 0.32
VPS33B-205ENST00000556096 LRSAM1Q6UWE0 723 aa17.08■□□□□ 0.32
VPS33B-205ENST00000556096 ZNF444Q8N0Y2 327 aaPredicted RBP17.08■□□□□ 0.32
VPS33B-205ENST00000556096 TEKT1Q969V4 418 aa17.08■□□□□ 0.32
VPS33B-205ENST00000556096 SAP30BPQ9UHR5 308 aaKnown RBP17.08■□□□□ 0.32
VPS33B-205ENST00000556096 ADAMTSL1Q8N6G6 1762 aa17.08■□□□□ 0.32
VPS33B-205ENST00000556096 F8W031 263 aaPredicted RBP17.07■□□□□ 0.32
VPS33B-205ENST00000556096 DEXIO95424 95 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 HDLBPQ00341 1268 aaKnown RBP17.07■□□□□ 0.32
VPS33B-205ENST00000556096 TRIM29Q14134 588 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 DACT2Q5SW24 774 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 RCSD1Q6JBY9 416 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 AIFM3Q96NN9 605 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 MXD3Q9BW11 206 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 RNF26Q9BY78 433 aaPredicted RBP17.07■□□□□ 0.32
VPS33B-205ENST00000556096 VPS33BQ9H267 617 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 USP17L3A6NCW0 530 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 USP17L4A6NCW7 530 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 GOLGA6L4A6NEF3 574 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 XRCC6P12956 609 aaKnown RBP eCLIP17.07■□□□□ 0.32
VPS33B-205ENST00000556096 USP17L1Q7RTZ2 530 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 USP28Q96RU2 1077 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 MAP3K14Q99558 947 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 GJB4Q9NTQ9 266 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 RTEL1Q9NZ71 1219 aa17.07■□□□□ 0.32
VPS33B-205ENST00000556096 YDJCA8MPS7 323 aa17.06■□□□□ 0.32
VPS33B-205ENST00000556096 NMT2O60551 498 aa17.06■□□□□ 0.32
VPS33B-205ENST00000556096 RASA1P20936 1047 aa17.06■□□□□ 0.32
VPS33B-205ENST00000556096 CDK8P49336 464 aa17.06■□□□□ 0.32
VPS33B-205ENST00000556096 FUT2Q10981 343 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms