RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 ZSWIM9Q86XI8 627 aa7.72□□□□□ -1.17
SCFD1-217ENST00000555953 HID1Q8IV36 788 aa7.72□□□□□ -1.17
SCFD1-217ENST00000555953 MFSD4AQ8N468 514 aa7.72□□□□□ -1.17
SCFD1-217ENST00000555953 MFSD2AQ8NA29 543 aa7.72□□□□□ -1.17
SCFD1-217ENST00000555953 CARS2Q9HA77 564 aaKnown RBP7.72□□□□□ -1.17
SCFD1-217ENST00000555953 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.72□□□□□ -1.17
SCFD1-217ENST00000555953 LMCD1Q9NZU5 365 aa7.72□□□□□ -1.17
SCFD1-217ENST00000555953 AK5Q9Y6K8 562 aa7.72□□□□□ -1.17
SCFD1-217ENST00000555953 GFRA2O00451 464 aa7.71□□□□□ -1.18
SCFD1-217ENST00000555953 CST3P01034 146 aaPredicted RBP7.71□□□□□ -1.18
SCFD1-217ENST00000555953 CDKAL1Q5VV42 579 aa7.71□□□□□ -1.18
SCFD1-217ENST00000555953 LETMD1Q6P1Q0 360 aa7.71□□□□□ -1.18
SCFD1-217ENST00000555953 DUSP9Q99956 384 aaKnown RBP7.71□□□□□ -1.18
SCFD1-217ENST00000555953 CAPN6Q9Y6Q1 641 aa7.71□□□□□ -1.18
SCFD1-217ENST00000555953 ZNF503-AS2A6NEH8 195 aa7.7□□□□□ -1.18
SCFD1-217ENST00000555953 H3BS24 57 aa7.7□□□□□ -1.18
SCFD1-217ENST00000555953 LIG3P49916 1009 aa7.7□□□□□ -1.18
SCFD1-217ENST00000555953 MAP3K11Q16584 847 aa7.7□□□□□ -1.18
SCFD1-217ENST00000555953 FYB2Q5VWT5 728 aa7.7□□□□□ -1.18
SCFD1-217ENST00000555953 AGMOQ6ZNB7 445 aa7.7□□□□□ -1.18
SCFD1-217ENST00000555953 XAGE3Q8WTP9 111 aa7.7□□□□□ -1.18
SCFD1-217ENST00000555953 ST14Q9Y5Y6 855 aa7.7□□□□□ -1.18
SCFD1-217ENST00000555953 KCNMB1Q16558 191 aa7.69□□□□□ -1.18
SCFD1-217ENST00000555953 MEI1Q5TIA1 1274 aa7.69□□□□□ -1.18
SCFD1-217ENST00000555953 ANKRD33BA6NCL7 494 aa7.68□□□□□ -1.18
SCFD1-217ENST00000555953 LRRC10BA6NIK2 292 aa7.68□□□□□ -1.18
SCFD1-217ENST00000555953 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.68□□□□□ -1.18
SCFD1-217ENST00000555953 CBX7O95931 251 aa7.68□□□□□ -1.18
SCFD1-217ENST00000555953 LMNB1P20700 586 aa7.68□□□□□ -1.18
SCFD1-217ENST00000555953 MESP2Q0VG99 397 aa7.68□□□□□ -1.18
SCFD1-217ENST00000555953 DPH2Q9BQC3 489 aaPredicted RBP7.68□□□□□ -1.18
SCFD1-217ENST00000555953 C19orf73Q9NVV2 129 aa7.68□□□□□ -1.18
SCFD1-217ENST00000555953 PATL2C9JE40 543 aaKnown RBP7.67□□□□□ -1.18
SCFD1-217ENST00000555953 TFE3P19532 575 aaPredicted RBP7.67□□□□□ -1.18
SCFD1-217ENST00000555953 EAPPQ56P03 285 aaPredicted RBP7.67□□□□□ -1.18
SCFD1-217ENST00000555953 ZNF746Q6NUN9 644 aaPredicted RBP7.67□□□□□ -1.18
SCFD1-217ENST00000555953 CDH24Q86UP0 819 aa7.67□□□□□ -1.18
SCFD1-217ENST00000555953 KSR1Q8IVT5 923 aa7.67□□□□□ -1.18
SCFD1-217ENST00000555953 LIN37Q96GY3 246 aaPredicted RBP7.67□□□□□ -1.18
SCFD1-217ENST00000555953 TJP2Q9UDY2 1190 aa7.67□□□□□ -1.18
SCFD1-217ENST00000555953 TACC3Q9Y6A5 838 aa7.67□□□□□ -1.18
SCFD1-217ENST00000555953 AFMP43652 599 aa7.66□□□□□ -1.18
SCFD1-217ENST00000555953 MLANAQ16655 118 aa7.66□□□□□ -1.18
SCFD1-217ENST00000555953 NPAS4Q8IUM7 802 aa7.66□□□□□ -1.18
SCFD1-217ENST00000555953 MRPL41Q8IXM3 137 aaKnown RBP7.66□□□□□ -1.18
SCFD1-217ENST00000555953 MIR1-1HGQ9H1L0 117 aa7.66□□□□□ -1.18
SCFD1-217ENST00000555953 DBX1A6NMT0 343 aa7.65□□□□□ -1.18
SCFD1-217ENST00000555953 PGRP06401 933 aa7.65□□□□□ -1.18
SCFD1-217ENST00000555953 TNK2Q07912 1038 aa7.65□□□□□ -1.18
SCFD1-217ENST00000555953 PKN1Q16512 942 aa7.65□□□□□ -1.18
SCFD1-217ENST00000555953 LCE1DQ5T752 114 aa7.65□□□□□ -1.18
SCFD1-217ENST00000555953 THAP5Q7Z6K1 395 aa7.65□□□□□ -1.18
SCFD1-217ENST00000555953 UBE2FQ969M7 185 aa7.65□□□□□ -1.18
SCFD1-217ENST00000555953 TMEM87BQ96K49 555 aa7.65□□□□□ -1.18
SCFD1-217ENST00000555953 KIR3DL1P43629 444 aa7.64□□□□□ -1.19
SCFD1-217ENST00000555953 SND1Q7KZF4 910 aaKnown RBP eCLIP7.64□□□□□ -1.19
SCFD1-217ENST00000555953 KIRREL1Q96J84 757 aa7.64□□□□□ -1.19
SCFD1-217ENST00000555953 FAM84AQ96KN4 292 aa7.64□□□□□ -1.19
SCFD1-217ENST00000555953 SLC38A3Q99624 504 aa7.64□□□□□ -1.19
SCFD1-217ENST00000555953 FAM53CQ9NYF3 392 aa7.64□□□□□ -1.19
SCFD1-217ENST00000555953 ZSWIM5Q9P217 1185 aa7.64□□□□□ -1.19
SCFD1-217ENST00000555953 PARP2Q9UGN5 583 aa7.64□□□□□ -1.19
SCFD1-217ENST00000555953 TLR6Q9Y2C9 796 aa7.64□□□□□ -1.19
SCFD1-217ENST00000555953 GLI1P08151 1106 aa7.63□□□□□ -1.19
SCFD1-217ENST00000555953 CYP7A1P22680 504 aa7.63□□□□□ -1.19
SCFD1-217ENST00000555953 GDNFP39905 211 aa7.63□□□□□ -1.19
SCFD1-217ENST00000555953 RPL6Q02878 288 aaKnown RBP7.63□□□□□ -1.19
SCFD1-217ENST00000555953 TSNAXIP1Q2TAA8 658 aa7.63□□□□□ -1.19
SCFD1-217ENST00000555953 SLC6A19Q695T7 634 aa7.63□□□□□ -1.19
SCFD1-217ENST00000555953 COX4I2Q96KJ9 171 aa7.63□□□□□ -1.19
SCFD1-217ENST00000555953 DAB2P98082 770 aa7.62□□□□□ -1.19
SCFD1-217ENST00000555953 DNAJB8Q8NHS0 232 aa7.62□□□□□ -1.19
SCFD1-217ENST00000555953 JARID2Q92833 1246 aaPredicted RBP7.62□□□□□ -1.19
SCFD1-217ENST00000555953 ACSF2Q96CM8 615 aaPredicted RBP7.62□□□□□ -1.19
SCFD1-217ENST00000555953 CTSHP09668 335 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 PDE4BQ07343 736 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 PSMD2Q13200 908 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 TAF1CQ15572 869 aaPredicted RBP7.61□□□□□ -1.19
SCFD1-217ENST00000555953 PRR23BQ6ZRT6 265 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 MCATQ8IVS2 390 aaKnown RBP7.61□□□□□ -1.19
SCFD1-217ENST00000555953 PHC3Q8NDX5 983 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 Q96M66 194 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 ALPK1Q96QP1 1244 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 NOC4LQ9BVI4 516 aaKnown RBP7.61□□□□□ -1.19
SCFD1-217ENST00000555953 SLAMF8Q9P0V8 285 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 ADAM30Q9UKF2 790 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 CORINQ9Y5Q5 1042 aa7.61□□□□□ -1.19
SCFD1-217ENST00000555953 WASH4PA8MWX3 477 aa7.6□□□□□ -1.19
SCFD1-217ENST00000555953 ESR1P03372 595 aa7.6□□□□□ -1.19
SCFD1-217ENST00000555953 RLBP1P12271 317 aa7.6□□□□□ -1.19
SCFD1-217ENST00000555953 ETV3P41162 512 aa7.6□□□□□ -1.19
SCFD1-217ENST00000555953 ST13P50502 369 aaKnown RBP7.6□□□□□ -1.19
SCFD1-217ENST00000555953 TMEM67Q5HYA8 995 aa7.6□□□□□ -1.19
SCFD1-217ENST00000555953 BHLHE22Q8NFJ8 381 aaPredicted RBP7.6□□□□□ -1.19
SCFD1-217ENST00000555953 PIWIL2Q8TC59 973 aaKnown RBP7.6□□□□□ -1.19
SCFD1-217ENST00000555953 FAM161BQ96MY7 647 aa7.6□□□□□ -1.19
SCFD1-217ENST00000555953 DNAJC25-GNG10A0A024R161 153 aa7.59□□□□□ -1.19
SCFD1-217ENST00000555953 F6X3S4 739 aa7.59□□□□□ -1.19
SCFD1-217ENST00000555953 MPZL3Q6UWV2 235 aa7.59□□□□□ -1.19
SCFD1-217ENST00000555953 DNAJC14Q6Y2X3 702 aaPredicted RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms