RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 CERKLQ49MI3 558 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-220ENST00000555634 TMEM67Q5HYA8 995 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 STOX1Q6ZVD7 989 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 USP48Q86UV5 1035 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 MB21D2Q8IYB1 491 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-220ENST00000555634 TMTC2Q8N394 836 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 ZNF784Q8NCA9 323 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-220ENST00000555634 DYNLL2Q96FJ2 89 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 NBPF3Q9H094 633 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 SH2D4AQ9H788 454 aa13.16□□□□□ -0.3
SHMT2-220ENST00000555634 NAP1L2Q9ULW6 460 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-220ENST00000555634 ANGEL1Q9UNK9 670 aaKnown RBP13.16□□□□□ -0.3
SHMT2-220ENST00000555634 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.16□□□□□ -0.3
SHMT2-220ENST00000555634 ASTN2O75129 1339 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-220ENST00000555634 TNKSO95271 1327 aa13.15□□□□□ -0.3
SHMT2-220ENST00000555634 FGRP09769 529 aa13.15□□□□□ -0.3
SHMT2-220ENST00000555634 HIRAP54198 1017 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-220ENST00000555634 C1QTNF8P60827 252 aa13.15□□□□□ -0.3
SHMT2-220ENST00000555634 TFAP4Q01664 338 aa13.15□□□□□ -0.3
SHMT2-220ENST00000555634 TTLL12Q14166 644 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-220ENST00000555634 ABCB5Q2M3G0 1257 aa13.15□□□□□ -0.3
SHMT2-220ENST00000555634 IFIT1BQ5T764 474 aaKnown RBP13.15□□□□□ -0.3
SHMT2-220ENST00000555634 TMEM179Q6ZVK1 233 aa13.15□□□□□ -0.3
SHMT2-220ENST00000555634 ZFPM1Q8IX07 1006 aa13.15□□□□□ -0.3
SHMT2-220ENST00000555634 ZSCAN10Q96SZ4 725 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-220ENST00000555634 GINM1Q9NU53 330 aa13.15□□□□□ -0.3
SHMT2-220ENST00000555634 ASNSP08243 561 aa13.14□□□□□ -0.31
SHMT2-220ENST00000555634 RASA1P20936 1047 aa13.14□□□□□ -0.31
SHMT2-220ENST00000555634 IREB2P48200 963 aaKnown RBP13.14□□□□□ -0.31
SHMT2-220ENST00000555634 GABPAQ06546 454 aa13.14□□□□□ -0.31
SHMT2-220ENST00000555634 Q6ZUG5 572 aa13.14□□□□□ -0.31
SHMT2-220ENST00000555634 SLC44A5Q8NCS7 719 aa13.14□□□□□ -0.31
SHMT2-220ENST00000555634 ZSCAN31Q96LW9 406 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-220ENST00000555634 KAT14Q9H8E8 782 aa13.14□□□□□ -0.31
SHMT2-220ENST00000555634 ARHGEF10LQ9HCE6 1279 aa13.14□□□□□ -0.31
SHMT2-220ENST00000555634 PICK1Q9NRD5 415 aa13.14□□□□□ -0.31
SHMT2-220ENST00000555634 SH2B1Q9NRF2 756 aaPredicted RBP13.14□□□□□ -0.31
SHMT2-220ENST00000555634 RBM19Q9Y4C8 960 aaKnown RBP13.14□□□□□ -0.31
SHMT2-220ENST00000555634 ADM5C9JUS6 153 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 K7ELQ4 463 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-220ENST00000555634 DHX16O60231 1041 aaKnown RBP13.13□□□□□ -0.31
SHMT2-220ENST00000555634 CALM1P0DP23 149 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 CALM2P0DP24 149 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 CALM3P0DP25 149 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 SHMT1P34896 483 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 FAM47AQ5JRC9 791 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 NOL8Q76FK4 1167 aaKnown RBP13.13□□□□□ -0.31
SHMT2-220ENST00000555634 SH3BP5LQ7L8J4 393 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 ARMC9Q7Z3E5 817 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 CATIPQ7Z7H3 387 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 METTL16Q86W50 562 aaKnown RBP13.13□□□□□ -0.31
SHMT2-220ENST00000555634 BRF1Q92994 677 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 SNX21Q969T3 373 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 CDCA5Q96FF9 252 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 KIF2CQ99661 725 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 NMRK2Q9NPI5 230 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 ZSWIM5Q9P217 1185 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 PGAP2Q9UHJ9 254 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 STX8Q9UNK0 236 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 LIMCH1Q9UPQ0 1083 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 CSADQ9Y600 493 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 SLC12A7Q9Y666 1083 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 TAF6LQ9Y6J9 622 aa13.13□□□□□ -0.31
SHMT2-220ENST00000555634 GOLGA8BA8MQT2 603 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 CTNND1O60716 968 aaKnown RBP13.12□□□□□ -0.31
SHMT2-220ENST00000555634 TTLL1O95922 423 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 CPA1P15085 419 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 LIFRP42702 1097 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 AK2P54819 239 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 ICA1Q05084 483 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 RAB3GAP1Q15042 981 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 NBPF12Q5TAG4 269 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-220ENST00000555634 CHADLQ6NUI6 762 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 TATDN1Q6P1N9 297 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 CPLX2Q6PUV4 134 aaKnown RBP13.12□□□□□ -0.31
SHMT2-220ENST00000555634 MIGA2Q7L4E1 593 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 CHST3Q7LGC8 479 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 NEDD1Q8NHV4 660 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 TEPSINQ96N21 525 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 WRNIP1Q96S55 665 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 TBC1D2Q9BYX2 928 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 ALDH8A1Q9H2A2 487 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-220ENST00000555634 KANSL2Q9H9L4 492 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 AS3MTQ9HBK9 375 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 TCP11L1Q9NUJ3 509 aa13.12□□□□□ -0.31
SHMT2-220ENST00000555634 PHIPQ8WWQ0 1821 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 CCDC196A0A1B0GTZ2 297 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 FAM196BA6NMK8 535 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 SH2B2O14492 632 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-220ENST00000555634 GDF11O95390 407 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 ATP2B2Q01814 1243 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 CYB5R4Q7L1T6 521 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 DGKHQ86XP1 1220 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 FBXL16Q8N461 479 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 TCEANC2Q96MN5 208 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 TTC14Q96N46 770 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 FEZ1Q99689 392 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 ZKSCAN3Q9BRR0 538 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 ZBTB21Q9ULJ3 1066 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 SCAF8Q9UPN6 1271 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms