RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 CCDC84Q86UT8 332 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-217ENST00000555116 IFNL1Q8IU54 200 aa17.03■□□□□ 0.32
SHMT2-217ENST00000555116 PTPN18Q99952 460 aa17.03■□□□□ 0.32
SHMT2-217ENST00000555116 SAGE1Q9NXZ1 904 aa17.03■□□□□ 0.32
SHMT2-217ENST00000555116 AFG3L2Q9Y4W6 797 aa17.03■□□□□ 0.32
SHMT2-217ENST00000555116 CASP8AP2Q9UKL3 1982 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 CCL15-CCL14A0A0B4J2E2 113 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 TRPA1O75762 1119 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 SNAPC2Q13487 334 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 CCL15Q16663 113 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 MCMDC2Q4G0Z9 681 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 SKAP1Q86WV1 359 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 DYNLL2Q96FJ2 89 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 ARPP21Q9UBL0 812 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-217ENST00000555116 TSKSQ9UJT2 592 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 TAOK2Q9UL54 1235 aa17.02■□□□□ 0.32
SHMT2-217ENST00000555116 CXCL11O14625 94 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 GDF11O95390 407 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 IFNL3Q8IZI9 196 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 SLC44A5Q8NCS7 719 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 GINM1Q9NU53 330 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 ZBTB21Q9ULJ3 1066 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 ASNSP08243 561 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 CETPP11597 493 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 MOGSQ13724 837 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 AMOTL1Q8IY63 956 aa17.01■□□□□ 0.31
SHMT2-217ENST00000555116 APPP05067 770 aa17■□□□□ 0.31
SHMT2-217ENST00000555116 CERKLQ49MI3 558 aaPredicted RBP17■□□□□ 0.31
SHMT2-217ENST00000555116 VPS53Q5VIR6 699 aa17■□□□□ 0.31
SHMT2-217ENST00000555116 C16orf86Q6ZW13 317 aa17■□□□□ 0.31
SHMT2-217ENST00000555116 ZNF589Q86UQ0 364 aaPredicted RBP17■□□□□ 0.31
SHMT2-217ENST00000555116 SWAP70Q9UH65 585 aa17■□□□□ 0.31
SHMT2-217ENST00000555116 USP17L5A8MUK1 530 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 LOC285556D6RIA3 1793 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 HIP1O00291 1037 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 TDO2P48775 406 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 LBX1P52954 281 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 ROBO3Q96MS0 1386 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 NACAP1Q9BZK3 213 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 DIAPH3Q9NSV4 1193 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 CCDC171Q6TFL3 1326 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 A0A0G2JLL6 359 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-217ENST00000555116 ALDH1A1P00352 501 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 GH2P01242 217 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 CDK8P49336 464 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 PRRT2Q7Z6L0 340 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-217ENST00000555116 FAM43AQ8N2R8 423 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 CFHR5Q9BXR6 569 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 TBC1D2Q9BYX2 928 aa16.99■□□□□ 0.31
SHMT2-217ENST00000555116 GREB1LQ9C091 1923 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-217ENST00000555116 MINDY4BA8MYZ0 360 aa16.98■□□□□ 0.31
SHMT2-217ENST00000555116 BTBD19C9JJ37 291 aa16.98■□□□□ 0.31
SHMT2-217ENST00000555116 SPP2Q13103 211 aa16.98■□□□□ 0.31
SHMT2-217ENST00000555116 ABCB5Q2M3G0 1257 aa16.98■□□□□ 0.31
SHMT2-217ENST00000555116 CWC27Q6UX04 472 aaKnown RBP16.98■□□□□ 0.31
SHMT2-217ENST00000555116 ZNF280CQ8ND82 737 aa16.98■□□□□ 0.31
SHMT2-217ENST00000555116 WDR18Q9BV38 432 aa16.98■□□□□ 0.31
SHMT2-217ENST00000555116 R3HDMLQ9H3Y0 253 aa16.98■□□□□ 0.31
SHMT2-217ENST00000555116 TRIM75PA6NK02 468 aa16.97■□□□□ 0.31
SHMT2-217ENST00000555116 TBC1D8O95759 1140 aa16.97■□□□□ 0.31
SHMT2-217ENST00000555116 GUCY1A2P33402 732 aa16.97■□□□□ 0.31
SHMT2-217ENST00000555116 ALX1Q15699 326 aa16.97■□□□□ 0.31
SHMT2-217ENST00000555116 OTUD7BQ6GQQ9 843 aa16.97■□□□□ 0.31
SHMT2-217ENST00000555116 NAPBQ9H115 298 aa16.97■□□□□ 0.31
SHMT2-217ENST00000555116 RBM19Q9Y4C8 960 aaKnown RBP16.97■□□□□ 0.31
SHMT2-217ENST00000555116 GPAT2Q6NUI2 795 aa16.97■□□□□ 0.31
SHMT2-217ENST00000555116 AS3MTQ9HBK9 375 aa16.97■□□□□ 0.31
SHMT2-217ENST00000555116 ZCCHC17Q9NP64 241 aaKnown RBP16.97■□□□□ 0.31
SHMT2-217ENST00000555116 PRDM10Q9NQV6 1147 aa16.97■□□□□ 0.31
SHMT2-217ENST00000555116 HSPD1P10809 573 aaKnown RBP16.96■□□□□ 0.31
SHMT2-217ENST00000555116 ANKRD23Q86SG2 305 aa16.96■□□□□ 0.31
SHMT2-217ENST00000555116 AKR1B1P15121 316 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 CHMLP26374 656 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 FASTKD5Q7L8L6 764 aaKnown RBP16.95■□□□□ 0.3
SHMT2-217ENST00000555116 CCDC17Q96LX7 622 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 IL25Q9H293 177 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 CABP5Q9NP86 173 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 LAMA4Q16363 1823 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 MFAP1P55081 439 aaKnown RBP16.95■□□□□ 0.3
SHMT2-217ENST00000555116 PPARAQ07869 468 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 CRHR2Q13324 411 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 SEPT2Q15019 361 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 SH3D19Q5HYK7 790 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 STK11IPQ8N1F8 1099 aa16.95■□□□□ 0.3
SHMT2-217ENST00000555116 ZMYM6O95789 1325 aa16.94■□□□□ 0.3
SHMT2-217ENST00000555116 FGAP02671 866 aa16.94■□□□□ 0.3
SHMT2-217ENST00000555116 RASA1P20936 1047 aa16.94■□□□□ 0.3
SHMT2-217ENST00000555116 BACE1P56817 501 aa16.94■□□□□ 0.3
SHMT2-217ENST00000555116 RAB3GAP1Q15042 981 aa16.94■□□□□ 0.3
SHMT2-217ENST00000555116 NOM1Q5C9Z4 860 aaKnown RBP16.94■□□□□ 0.3
SHMT2-217ENST00000555116 GADL1Q6ZQY3 521 aa16.94■□□□□ 0.3
SHMT2-217ENST00000555116 TMEM179Q6ZVK1 233 aa16.94■□□□□ 0.3
SHMT2-217ENST00000555116 MPHOSPH10O00566 681 aaKnown RBP16.93■□□□□ 0.3
SHMT2-217ENST00000555116 HMGCS2P54868 508 aa16.93■□□□□ 0.3
SHMT2-217ENST00000555116 DGKZQ13574 1117 aa16.93■□□□□ 0.3
SHMT2-217ENST00000555116 MTMR2Q13614 643 aa16.93■□□□□ 0.3
SHMT2-217ENST00000555116 TAF1CQ15572 869 aaPredicted RBP16.93■□□□□ 0.3
SHMT2-217ENST00000555116 BMP2KLQ5H9B9 411 aa16.93■□□□□ 0.3
SHMT2-217ENST00000555116 USP17L10C9JJH3 530 aa16.93■□□□□ 0.3
SHMT2-217ENST00000555116 GPR25O00155 361 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms