RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PABPC4Q13310 644 aaKnown RBP eCLIP19.37■□□□□ 0.69
CCDC88C-209ENST00000554872 GCC1Q96CN9 775 aa19.37■□□□□ 0.69
CCDC88C-209ENST00000554872 CENPFP49454 3210 aa19.37■□□□□ 0.69
CCDC88C-209ENST00000554872 SALL3Q9BXA9 1300 aa19.36■□□□□ 0.69
CCDC88C-209ENST00000554872 C19orf81C9J6K1 198 aa19.36■□□□□ 0.69
CCDC88C-209ENST00000554872 MBD4O95243 580 aa19.36■□□□□ 0.69
CCDC88C-209ENST00000554872 CYP2C8P10632 490 aa19.36■□□□□ 0.69
CCDC88C-209ENST00000554872 PLCD1P51178 756 aa19.36■□□□□ 0.69
CCDC88C-209ENST00000554872 CPA4Q9UI42 421 aa19.36■□□□□ 0.69
CCDC88C-209ENST00000554872 RBBP6Q7Z6E9 1792 aaKnown RBP19.36■□□□□ 0.69
CCDC88C-209ENST00000554872 ERC2O15083 957 aa19.35■□□□□ 0.69
CCDC88C-209ENST00000554872 ZFYP08048 801 aaPredicted RBP19.35■□□□□ 0.69
CCDC88C-209ENST00000554872 SHMT1P34896 483 aa19.35■□□□□ 0.69
CCDC88C-209ENST00000554872 HMGCS2P54868 508 aa19.35■□□□□ 0.69
CCDC88C-209ENST00000554872 TREML2Q5T2D2 321 aa19.35■□□□□ 0.69
CCDC88C-209ENST00000554872 PI4K2BQ8TCG2 481 aa19.35■□□□□ 0.69
CCDC88C-209ENST00000554872 ARMT1Q9H993 441 aa19.35■□□□□ 0.69
CCDC88C-209ENST00000554872 MCM9Q9NXL9 1143 aa19.35■□□□□ 0.69
CCDC88C-209ENST00000554872 USP17L10C9JJH3 530 aa19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 GLRX3O76003 335 aaKnown RBP19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 GDF11O95390 407 aa19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 POLR3DP05423 398 aaPredicted RBP19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 HOXA7P31268 230 aaPredicted RBP19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 GCLCP48506 637 aaPredicted RBP19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 SDR42E1Q8WUS8 393 aa19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 TRIM47Q96LD4 638 aa19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 C12orf42Q96LP6 360 aa19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 ARHGAP39Q9C0H5 1083 aa19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 BCL11AQ9H165 835 aa19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 SWAP70Q9UH65 585 aa19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 ZSWIM8A7E2V4 1837 aa19.34■□□□□ 0.69
CCDC88C-209ENST00000554872 GH2P01242 217 aa19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 HOXD10P28358 340 aa19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 CTGFP29279 349 aa19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 MLLT1Q03111 559 aaPredicted RBP19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 MTMR2Q13614 643 aa19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 FAM110CQ1W6H9 321 aa19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 LRRFIP1Q32MZ4 808 aaKnown RBP19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 CERKLQ49MI3 558 aaPredicted RBP19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 SMCR8Q8TEV9 937 aaPredicted RBP19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 SRRDQ9UH36 339 aa19.33■□□□□ 0.68
CCDC88C-209ENST00000554872 MX1P20591 662 aa19.32■□□□□ 0.68
CCDC88C-209ENST00000554872 PSMC4P43686 418 aa19.32■□□□□ 0.68
CCDC88C-209ENST00000554872 ABCB5Q2M3G0 1257 aa19.32■□□□□ 0.68
CCDC88C-209ENST00000554872 SHROOM1Q2M3G4 852 aaPredicted RBP19.32■□□□□ 0.68
CCDC88C-209ENST00000554872 GIMAP6Q6P9H5 292 aa19.32■□□□□ 0.68
CCDC88C-209ENST00000554872 APPBP2Q92624 585 aa19.32■□□□□ 0.68
CCDC88C-209ENST00000554872 PUS7LQ9H0K6 701 aaKnown RBP19.32■□□□□ 0.68
CCDC88C-209ENST00000554872 TMOD4Q9NZQ9 345 aa19.32■□□□□ 0.68
CCDC88C-209ENST00000554872 PTCH2Q9Y6C5 1203 aa19.32■□□□□ 0.68
CCDC88C-209ENST00000554872 MGAMO43451 1857 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 OSBPP22059 807 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 FCGRTP55899 365 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 SLC4A8Q2Y0W8 1093 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 SLFNL1Q499Z3 407 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 C12orf60Q5U649 245 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 TSHZ3Q63HK5 1081 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 TICAM2Q86XR7 235 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 DDRGK1Q96HY6 314 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 ZNF333Q96JL9 665 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 KIAA1683Q9H0B3 1180 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 ASCC2Q9H1I8 757 aaPredicted RBP19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 STAP2Q9UGK3 403 aa19.31■□□□□ 0.68
CCDC88C-209ENST00000554872 TNRC18O15417 2968 aaPredicted RBP19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 RNF113AO15541 343 aaKnown RBP19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 PRKAB2O43741 272 aa19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 CHGBP05060 677 aa19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 SOX10P56693 466 aa19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 USP17L2Q6R6M4 530 aa19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 NBPF11Q86T75 865 aa19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 SMC5Q8IY18 1101 aa19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 AMOTL1Q8IY63 956 aa19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 STRBPQ96SI9 672 aaKnown RBP19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 CABP5Q9NP86 173 aa19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 MORF4L1Q9UBU8 362 aa19.3■□□□□ 0.68
CCDC88C-209ENST00000554872 GUCY1A2P33402 732 aa19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 USP14P54578 494 aa19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 SLC9C1Q4G0N8 1177 aa19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 OTUD7AQ8TE49 926 aaPredicted RBP19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 GTF3C2Q8WUA4 911 aaPredicted RBP19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 EMILIN3Q9NT22 766 aa19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 ARPP21Q9UBL0 812 aaPredicted RBP19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 SLC4A4Q9Y6R1 1079 aa19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 ROBO3Q96MS0 1386 aa19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 BAZ2AQ9UIF9 1905 aaKnown RBP19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 BRCA2P51587 3418 aa19.29■□□□□ 0.68
CCDC88C-209ENST00000554872 FMNL1O95466 1100 aaPredicted RBP19.28■□□□□ 0.68
CCDC88C-209ENST00000554872 GNAT2P19087 354 aa19.28■□□□□ 0.68
CCDC88C-209ENST00000554872 SBK1Q52WX2 424 aa19.28■□□□□ 0.68
CCDC88C-209ENST00000554872 TMEM179Q6ZVK1 233 aa19.28■□□□□ 0.68
CCDC88C-209ENST00000554872 C16orf86Q6ZW13 317 aa19.28■□□□□ 0.68
CCDC88C-209ENST00000554872 OSBP2Q969R2 916 aa19.28■□□□□ 0.68
CCDC88C-209ENST00000554872 CCDC17Q96LX7 622 aa19.28■□□□□ 0.68
CCDC88C-209ENST00000554872 ZBTB47Q9UFB7 747 aaPredicted RBP19.28■□□□□ 0.68
CCDC88C-209ENST00000554872 MYPNQ86TC9 1320 aa19.27■□□□□ 0.68
CCDC88C-209ENST00000554872 USP17L12C9JPN9 530 aa19.27■□□□□ 0.68
CCDC88C-209ENST00000554872 USP17L21D6R901 530 aa19.27■□□□□ 0.68
CCDC88C-209ENST00000554872 CYP2D6P10635 497 aa19.27■□□□□ 0.68
CCDC88C-209ENST00000554872 IRX3P78415 501 aaPredicted RBP19.27■□□□□ 0.68
CCDC88C-209ENST00000554872 EVX2Q03828 476 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms