RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 RNASE1P07998 156 aaKnown RBP2.57□□□□□ -2
PRPF39-208ENST00000554785 CTSHP09668 335 aa2.57□□□□□ -2
PRPF39-208ENST00000554785 PLCL1Q15111 1095 aa2.57□□□□□ -2
PRPF39-208ENST00000554785 CCDC85BQ15834 202 aaPredicted RBP2.57□□□□□ -2
PRPF39-208ENST00000554785 MAP3K11Q16584 847 aa2.57□□□□□ -2
PRPF39-208ENST00000554785 AOC3Q16853 763 aa2.57□□□□□ -2
PRPF39-208ENST00000554785 EAPPQ56P03 285 aaPredicted RBP2.57□□□□□ -2
PRPF39-208ENST00000554785 SPACA3Q8IXA5 215 aa2.57□□□□□ -2
PRPF39-208ENST00000554785 MBNL3Q9NUK0 354 aaKnown RBP2.57□□□□□ -2
PRPF39-208ENST00000554785 TLR6Q9Y2C9 796 aa2.57□□□□□ -2
PRPF39-208ENST00000554785 AK5Q9Y6K8 562 aa2.57□□□□□ -2
PRPF39-208ENST00000554785 CARMIL2Q6F5E8 1435 aa2.57□□□□□ -2
PRPF39-208ENST00000554785 RBM47A0AV96 593 aaKnown RBP2.56□□□□□ -2
PRPF39-208ENST00000554785 GFRA2O00451 464 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 FUT4P22083 530 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 EIF4BP23588 611 aaKnown RBP2.56□□□□□ -2
PRPF39-208ENST00000554785 RBM25P49756 843 aaKnown RBP2.56□□□□□ -2
PRPF39-208ENST00000554785 PRKCQQ04759 706 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 IFI16Q16666 785 aaKnown RBP2.56□□□□□ -2
PRPF39-208ENST00000554785 WIPI1Q5MNZ9 446 aaPredicted RBP2.56□□□□□ -2
PRPF39-208ENST00000554785 SV2BQ7L1I2 683 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 ARMCX6Q7L4S7 300 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 ELMO3Q96BJ8 720 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 TNKS2Q9H2K2 1166 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 PICK1Q9NRD5 415 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 PARP2Q9UGN5 583 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.56□□□□□ -2
PRPF39-208ENST00000554785 CECR2Q9BXF3 1484 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 CC2D2AQ9P2K1 1620 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 TFE3P19532 575 aaPredicted RBP2.56□□□□□ -2
PRPF39-208ENST00000554785 LRRC14Q15048 493 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 ZNF326Q5BKZ1 582 aaKnown RBP2.56□□□□□ -2
PRPF39-208ENST00000554785 LILRA6Q6PI73 481 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 AGMOQ6ZNB7 445 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 FBXO33Q7Z6M2 555 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 GIPC2Q8TF65 315 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 ZNF428Q96B54 188 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 DPH2Q9BQC3 489 aaPredicted RBP2.56□□□□□ -2
PRPF39-208ENST00000554785 MKNK2Q9HBH9 465 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 VAV3Q9UKW4 847 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 SAMM50Q9Y512 469 aa2.56□□□□□ -2
PRPF39-208ENST00000554785 ZNF16P17020 682 aaPredicted RBP2.55□□□□□ -2
PRPF39-208ENST00000554785 KRTAP5-9P26371 169 aa2.55□□□□□ -2
PRPF39-208ENST00000554785 GRK4P32298 578 aa2.55□□□□□ -2
PRPF39-208ENST00000554785 DAB2P98082 770 aa2.55□□□□□ -2
PRPF39-208ENST00000554785 FGD1P98174 961 aa2.55□□□□□ -2
PRPF39-208ENST00000554785 LRRN4CLQ8ND94 238 aa2.55□□□□□ -2
PRPF39-208ENST00000554785 XAGE3Q8WTP9 111 aa2.55□□□□□ -2
PRPF39-208ENST00000554785 HRASLS5Q96KN8 279 aa2.55□□□□□ -2
PRPF39-208ENST00000554785 WNT10AQ9GZT5 417 aa2.55□□□□□ -2
PRPF39-208ENST00000554785 WASH4PA8MWX3 477 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 IGF2BP3O00425 579 aaKnown RBP eCLIP2.54□□□□□ -2
PRPF39-208ENST00000554785 LRIG2O94898 1065 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 LIG3P49916 1009 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 ETF1P62495 437 aaKnown RBP2.54□□□□□ -2
PRPF39-208ENST00000554785 PRAMEF13Q5VWM6 474 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 SCARA3Q6AZY7 606 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 CDC37L1Q7L3B6 337 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 HDXQ7Z353 690 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 ZNF507Q8TCN5 953 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 FAM168AQ92567 244 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 JARID2Q92833 1246 aaPredicted RBP2.54□□□□□ -2
PRPF39-208ENST00000554785 RC3H2Q9HBD1 1191 aaKnown RBP2.54□□□□□ -2
PRPF39-208ENST00000554785 CORINQ9Y5Q5 1042 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 TMEM265A0A087WTH1 108 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 UNCXA6NJT0 531 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 RPS26P62854 115 aaKnown RBP2.54□□□□□ -2
PRPF39-208ENST00000554785 ZNF648Q5T619 568 aaPredicted RBP2.54□□□□□ -2
PRPF39-208ENST00000554785 CDKAL1Q5VV42 579 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 BNC2Q6ZN30 1099 aaPredicted RBP2.54□□□□□ -2
PRPF39-208ENST00000554785 ARHGAP27Q6ZUM4 889 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 PI4K2BQ8TCG2 481 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 HSPA12BQ96MM6 686 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 MIPEPQ99797 713 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 FOXQ1Q9C009 403 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 BCL11AQ9H165 835 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 ATP13A1Q9HD20 1204 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 PRDM5Q9NQX1 630 aaPredicted RBP2.54□□□□□ -2
PRPF39-208ENST00000554785 SEMA3GQ9NS98 782 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 TJP2Q9UDY2 1190 aa2.54□□□□□ -2
PRPF39-208ENST00000554785 PITPNM2Q9BZ72 1349 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 UPK3BL1B0FP48 263 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 UPK3BL2E5RIL1 263 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 E9PSI1 815 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 RAP1GAPP47736 663 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 PSMD2Q13200 908 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 FYB2Q5VWT5 728 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 LETMD1Q6P1Q0 360 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 CDH24Q86UP0 819 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 HID1Q8IV36 788 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 PHC3Q8NDX5 983 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 ACSF2Q96CM8 615 aaPredicted RBP2.53□□□□□ -2
PRPF39-208ENST00000554785 FRMD6Q96NE9 622 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 C19orf73Q9NVV2 129 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 GTF2IRD1Q9UHL9 959 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 SNX11Q9Y5W9 270 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 ST14Q9Y5Y6 855 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 SNCAIPQ9Y6H5 919 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 USP31Q70CQ4 1352 aa2.53□□□□□ -2
PRPF39-208ENST00000554785 FAM221AA4D161 298 aa2.53□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms