RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 CRB1P82279 1406 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 KRBA1A5PL33 1030 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 KIF4AO95239 1232 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 ALBP02768 609 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 PRKAR2BP31323 418 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 MAPK8P45983 427 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 NRLP54845 237 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 GPLD1P80108 840 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 MLLT1Q03111 559 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-212ENST00000554486 PEAR1Q5VY43 1037 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-212ENST00000554486 TOM1L2Q6ZVM7 507 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 CCDC146Q8IYE0 955 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 TRIM11Q96F44 468 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 DNAJC25Q9H1X3 360 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 NAGPAQ9UK23 515 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 AFF2P51816 1311 aa8.29□□□□□ -1.08
SCFD1-212ENST00000554486 PNMA6FA0A0J9YX94 578 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 J3QW42 95 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 CPNE3O75131 537 aaKnown RBP8.28□□□□□ -1.08
SCFD1-212ENST00000554486 PSAPP07602 524 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 SPATA31C1P0DKV0 1188 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 ACPPP15309 386 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 CES1P23141 567 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 PLAURQ03405 335 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 TRIM28Q13263 835 aaKnown RBP8.28□□□□□ -1.08
SCFD1-212ENST00000554486 C20orf204Q6ZNR8 217 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 RUNDC1Q96C34 613 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 PHACTR3Q96KR7 559 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 NSUN5Q96P11 429 aaKnown RBP8.28□□□□□ -1.08
SCFD1-212ENST00000554486 LATS2Q9NRM7 1088 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 USP21Q9UK80 565 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 WNK3Q9BYP7 1800 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 MEGF6O75095 1541 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 ATRNO75882 1429 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 SPATA31A1Q5TZJ5 1347 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 SPATA31A5Q5VU36 1347 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 SPATA31A7Q8IWB4 1347 aa8.28□□□□□ -1.08
SCFD1-212ENST00000554486 RGS9O75916 674 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-212ENST00000554486 VPS72Q15906 364 aa8.27□□□□□ -1.09
SCFD1-212ENST00000554486 PI16Q6UXB8 463 aa8.27□□□□□ -1.09
SCFD1-212ENST00000554486 HFE2Q6ZVN8 426 aa8.27□□□□□ -1.09
SCFD1-212ENST00000554486 FAM35AQ86V20 835 aa8.27□□□□□ -1.09
SCFD1-212ENST00000554486 GALNT12Q8IXK2 581 aa8.27□□□□□ -1.09
SCFD1-212ENST00000554486 CEP120Q8N960 986 aa8.27□□□□□ -1.09
SCFD1-212ENST00000554486 CCDC74AQ96AQ1 378 aa8.27□□□□□ -1.09
SCFD1-212ENST00000554486 JPH1Q9HDC5 661 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-212ENST00000554486 DISP2A7MBM2 1401 aa8.27□□□□□ -1.09
SCFD1-212ENST00000554486 DLG5Q8TDM6 1919 aa8.27□□□□□ -1.09
SCFD1-212ENST00000554486 LOC102724428A0A0B4J2F2 783 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 APAF1O14727 1248 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 SIK1P57059 783 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 EAPPQ56P03 285 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-212ENST00000554486 TRAPPC3LQ5T215 181 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 PSAPL1Q6NUJ1 521 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 TCP11L2Q8N4U5 519 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 EPS8L3Q8TE67 593 aaKnown RBP8.26□□□□□ -1.09
SCFD1-212ENST00000554486 NUDT8Q8WV74 236 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 PNNQ9H307 717 aaKnown RBP8.26□□□□□ -1.09
SCFD1-212ENST00000554486 USP35Q9P2H5 1018 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 GLI3P10071 1580 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 PKD1L3Q7Z443 1732 aa8.26□□□□□ -1.09
SCFD1-212ENST00000554486 PARP4Q9UKK3 1724 aaKnown RBP8.26□□□□□ -1.09
SCFD1-212ENST00000554486 RBM47A0AV96 593 aaKnown RBP8.25□□□□□ -1.09
SCFD1-212ENST00000554486 NFKBIEO00221 500 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 LDHBP07195 334 aaKnown RBP8.25□□□□□ -1.09
SCFD1-212ENST00000554486 NEFLP07196 543 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 IL2RBP14784 551 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 ZNF16P17020 682 aaPredicted RBP8.25□□□□□ -1.09
SCFD1-212ENST00000554486 TMPOP42166 694 aaKnown RBP8.25□□□□□ -1.09
SCFD1-212ENST00000554486 NFE2L2Q16236 605 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 MTHFSDQ2M296 383 aaKnown RBP8.25□□□□□ -1.09
SCFD1-212ENST00000554486 ADAMTSL4Q6UY14 1074 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 C8orf86Q6ZUL3 223 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 RAPGEF4Q8WZA2 1011 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 PMEPA1Q969W9 287 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 ZNF428Q96B54 188 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 SPOCK3Q9BQ16 436 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 BCL2L13Q9BXK5 485 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 FRRS1LQ9P0K9 344 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 THRAP3Q9Y2W1 955 aaKnown RBP8.25□□□□□ -1.09
SCFD1-212ENST00000554486 OVOS2A0A0G2JMS6 1433 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 SHANK3Q9BYB0 1731 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 MAPK8IP3Q9UPT6 1336 aa8.25□□□□□ -1.09
SCFD1-212ENST00000554486 PLEKHG2Q9H7P9 1386 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 TRPA1O75762 1119 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 APBA3O96018 575 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 NID1P14543 1247 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 CPB1P15086 417 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 HNRNPUQ00839 825 aaKnown RBP eCLIP8.24□□□□□ -1.09
SCFD1-212ENST00000554486 HYAL2Q12891 473 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 PERM1Q5SV97 790 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 ELMSAN1Q6PJG2 1045 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 HHIPQ96QV1 700 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 NACC1Q96RE7 527 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 NPHS2Q9NP85 383 aa8.24□□□□□ -1.09
SCFD1-212ENST00000554486 RGS17Q9UGC6 210 aaPredicted RBP8.24□□□□□ -1.09
SCFD1-212ENST00000554486 TRPC5Q9UL62 973 aaPredicted RBP8.24□□□□□ -1.09
SCFD1-212ENST00000554486 RRP7AQ9Y3A4 280 aaKnown RBP8.24□□□□□ -1.09
SCFD1-212ENST00000554486 A0A1W2PP55 124 aa8.23□□□□□ -1.09
SCFD1-212ENST00000554486 NEFMP07197 916 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms