RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 NDUFB9Q9Y6M9 179 aa17.32■□□□□ 0.36
SHMT2-208ENST00000553868 RNF113AO15541 343 aaKnown RBP17.31■□□□□ 0.36
SHMT2-208ENST00000553868 CYP2E1P05181 493 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-208ENST00000553868 CYP2C8P10632 490 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 BCRP11274 1271 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 MCCP23508 829 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 CACNB3P54284 484 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 MAP3K12Q12852 859 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 NMIQ13287 307 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-208ENST00000553868 ANKRD23Q86SG2 305 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 MAFAQ8NHW3 353 aaPredicted RBP17.31■□□□□ 0.36
SHMT2-208ENST00000553868 ANTXR1Q9H6X2 564 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 ANO2Q9NQ90 1003 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 HELLSQ9NRZ9 838 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 TAOK2Q9UL54 1235 aa17.31■□□□□ 0.36
SHMT2-208ENST00000553868 PLA2G5P39877 138 aa17.3■□□□□ 0.36
SHMT2-208ENST00000553868 MDM2Q00987 491 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-208ENST00000553868 MOGSQ13724 837 aa17.3■□□□□ 0.36
SHMT2-208ENST00000553868 FAM109BQ6ICB4 259 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-208ENST00000553868 TMED8Q6PL24 325 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-208ENST00000553868 PI16Q6UXB8 463 aa17.3■□□□□ 0.36
SHMT2-208ENST00000553868 ZGPATQ8N5A5 531 aaKnown RBP17.3■□□□□ 0.36
SHMT2-208ENST00000553868 CDX2Q99626 313 aaPredicted RBP17.3■□□□□ 0.36
SHMT2-208ENST00000553868 DDX60LQ5H9U9 1706 aaKnown RBP17.3■□□□□ 0.36
SHMT2-208ENST00000553868 IDH1O75874 414 aaKnown RBP17.29■□□□□ 0.36
SHMT2-208ENST00000553868 IL1R1P14778 569 aa17.29■□□□□ 0.36
SHMT2-208ENST00000553868 RBM25P49756 843 aaKnown RBP17.29■□□□□ 0.36
SHMT2-208ENST00000553868 MCMDC2Q4G0Z9 681 aa17.29■□□□□ 0.36
SHMT2-208ENST00000553868 USP26Q9BXU7 913 aa17.29■□□□□ 0.36
SHMT2-208ENST00000553868 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.29■□□□□ 0.363e-7■□□□□ 10.1
SHMT2-208ENST00000553868 TTF2Q9UNY4 1162 aaKnown RBP17.29■□□□□ 0.36
SHMT2-208ENST00000553868 FKBP1AP62942 108 aaKnown RBP17.28■□□□□ 0.36
SHMT2-208ENST00000553868 ZMYM1Q5SVZ6 1142 aa17.28■□□□□ 0.36
SHMT2-208ENST00000553868 SPTY2D1Q68D10 685 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-208ENST00000553868 TDRD7Q8NHU6 1098 aaKnown RBP17.28■□□□□ 0.36
SHMT2-208ENST00000553868 WDR66Q8TBY9 1149 aa17.28■□□□□ 0.36
SHMT2-208ENST00000553868 APPBP2Q92624 585 aa17.28■□□□□ 0.36
SHMT2-208ENST00000553868 FAM227BQ96M60 508 aa17.28■□□□□ 0.36
SHMT2-208ENST00000553868 PIH1D3Q9NQM4 214 aaKnown RBP17.28■□□□□ 0.36
SHMT2-208ENST00000553868 LRP2BPQ9P2M1 347 aa17.28■□□□□ 0.36
SHMT2-208ENST00000553868 DOCK3Q8IZD9 2030 aa17.28■□□□□ 0.36
SHMT2-208ENST00000553868 A0A0D9SFI3 127 aa17.27■□□□□ 0.36
SHMT2-208ENST00000553868 INPP5BP32019 993 aa17.27■□□□□ 0.36
SHMT2-208ENST00000553868 TNNI2P48788 182 aa17.27■□□□□ 0.36
SHMT2-208ENST00000553868 UBE3CQ15386 1083 aa17.27■□□□□ 0.36
SHMT2-208ENST00000553868 SLC9C2Q5TAH2 1124 aa17.27■□□□□ 0.36
SHMT2-208ENST00000553868 PXYLP1Q8TE99 480 aa17.27■□□□□ 0.36
SHMT2-208ENST00000553868 NBPF3Q9H094 633 aa17.27■□□□□ 0.36
SHMT2-208ENST00000553868 IQSEC3Q9UPP2 1182 aaPredicted RBP17.27■□□□□ 0.36
SHMT2-208ENST00000553868 ADD2P35612 726 aa17.26■□□□□ 0.35
SHMT2-208ENST00000553868 PPATQ06203 517 aa17.26■□□□□ 0.35
SHMT2-208ENST00000553868 CHAF1AQ13111 956 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-208ENST00000553868 ZNF697Q5TEC3 545 aa17.26■□□□□ 0.35
SHMT2-208ENST00000553868 MIGA2Q7L4E1 593 aa17.26■□□□□ 0.35
SHMT2-208ENST00000553868 FAM122AQ96E09 287 aa17.26■□□□□ 0.35
SHMT2-208ENST00000553868 C11orf49Q9H6J7 331 aa17.26■□□□□ 0.35
SHMT2-208ENST00000553868 SERPINA10Q9UK55 444 aa17.26■□□□□ 0.35
SHMT2-208ENST00000553868 COL2A1P02458 1487 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-208ENST00000553868 CCDC171Q6TFL3 1326 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 FAM205AQ6ZU69 1335 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 SALL1Q9NSC2 1324 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 PDE6AP16499 860 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 CRKP46108 304 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 GRIK5Q16478 980 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 MFSD14BQ5SR56 506 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 GPAT2Q6NUI2 795 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 MYLIPQ8WY64 445 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 DDRGK1Q96HY6 314 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 PARK7Q99497 189 aaKnown RBP17.25■□□□□ 0.35
SHMT2-208ENST00000553868 ABCF2Q9UG63 623 aa17.25■□□□□ 0.35
SHMT2-208ENST00000553868 PFASO15067 1338 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 TNFRSF10AO00220 468 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 TNPO2O14787 897 aaKnown RBP17.24■□□□□ 0.35
SHMT2-208ENST00000553868 CAPN2P17655 700 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 TRIM32Q13049 653 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 IRF5Q13568 498 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 ERICH6Q7L0X2 663 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 ANKLE1Q8NAG6 615 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 TBC1D22AQ8WUA7 517 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 SYMPKQ92797 1274 aaKnown RBP17.24■□□□□ 0.35
SHMT2-208ENST00000553868 LSG1Q9H089 658 aaKnown RBP17.24■□□□□ 0.35
SHMT2-208ENST00000553868 RAI14Q9P0K7 980 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 KCNH4Q9UQ05 1017 aa17.24■□□□□ 0.35
SHMT2-208ENST00000553868 TMEM265A0A087WTH1 108 aa17.23■□□□□ 0.35
SHMT2-208ENST00000553868 MAGEB6Q8N7X4 407 aa17.23■□□□□ 0.35
SHMT2-208ENST00000553868 MAST3O60307 1309 aa17.22■□□□□ 0.35
SHMT2-208ENST00000553868 ZNF532Q9HCE3 1301 aa17.22■□□□□ 0.35
SHMT2-208ENST00000553868 ANAPC15P60006 121 aa17.22■□□□□ 0.35
SHMT2-208ENST00000553868 IL27Q8NEV9 243 aa17.22■□□□□ 0.35
SHMT2-208ENST00000553868 IL25Q9H293 177 aa17.22■□□□□ 0.35
SHMT2-208ENST00000553868 U3KPZ7 1027 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-208ENST00000553868 LDHBP07195 334 aaKnown RBP17.21■□□□□ 0.35
SHMT2-208ENST00000553868 HOXD11P31277 338 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-208ENST00000553868 GSTO1P78417 241 aa17.21■□□□□ 0.35
SHMT2-208ENST00000553868 RNF20Q5VTR2 975 aa17.21■□□□□ 0.35
SHMT2-208ENST00000553868 NAA16Q6N069 864 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-208ENST00000553868 ZNF589Q86UQ0 364 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-208ENST00000553868 DZIP1Q86YF9 867 aaKnown RBP17.21■□□□□ 0.35
SHMT2-208ENST00000553868 MAP4K1Q92918 833 aa17.21■□□□□ 0.35
SHMT2-208ENST00000553868 OSBP2Q969R2 916 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms