RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ZNF214Q9UL59 606 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-210ENST00000552045 ASMTLO95671 621 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 RAG1P15918 1043 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 MASP1P48740 699 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 SLC7A5Q01650 507 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 SLC10A6Q3KNW5 377 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 FOXD4L6Q3SYB3 417 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-210ENST00000552045 PPM1JQ5JR12 505 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 FOXD4L3Q6VB84 417 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-210ENST00000552045 MCATQ8IVS2 390 aaKnown RBP8.75□□□□□ -1.01
LIMA1-210ENST00000552045 DMRTC2Q8IXT2 367 aaPredicted RBP8.75□□□□□ -1.01
LIMA1-210ENST00000552045 ZSWIM2Q8NEG5 633 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 BTBD6Q96KE9 485 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 SPATA9Q9BWV2 254 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 RAD18Q9NS91 495 aa8.75□□□□□ -1.01
LIMA1-210ENST00000552045 FANCGO15287 622 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 FAM153BP0C7A2 387 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 ID3Q02535 119 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 LONRF2Q1L5Z9 754 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 GNPTABQ3T906 1256 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 EXOSC6Q5RKV6 272 aaKnown RBP8.74□□□□□ -1.01
LIMA1-210ENST00000552045 ZBTB37Q5TC79 503 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 SLFN12Q8IYM2 578 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 FAM13CQ8NE31 585 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 PICK1Q9NRD5 415 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 KCNK4Q9NYG8 393 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 TJP2Q9UDY2 1190 aa8.74□□□□□ -1.01
LIMA1-210ENST00000552045 TMPRSS2O15393 492 aa8.73□□□□□ -1.01
LIMA1-210ENST00000552045 WIPF1O43516 503 aa8.73□□□□□ -1.01
LIMA1-210ENST00000552045 DEAF1O75398 565 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-210ENST00000552045 ADAMTS2O95450 1211 aa8.73□□□□□ -1.01
LIMA1-210ENST00000552045 SLURP2P0DP57 97 aa8.73□□□□□ -1.01
LIMA1-210ENST00000552045 NID1P14543 1247 aa8.73□□□□□ -1.01
LIMA1-210ENST00000552045 POLR2BP30876 1174 aaKnown RBP8.73□□□□□ -1.01
LIMA1-210ENST00000552045 CCNFP41002 786 aa8.73□□□□□ -1.01
LIMA1-210ENST00000552045 YARSP54577 528 aaKnown RBP8.73□□□□□ -1.01
LIMA1-210ENST00000552045 AMPD3Q01432 767 aa8.73□□□□□ -1.01
LIMA1-210ENST00000552045 COL9A3Q14050 684 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-210ENST00000552045 DALRD3Q5D0E6 543 aaKnown RBP8.73□□□□□ -1.01
LIMA1-210ENST00000552045 TMEM67Q5HYA8 995 aa8.73□□□□□ -1.01
LIMA1-210ENST00000552045 LRRC47Q8N1G4 583 aaKnown RBP8.73□□□□□ -1.01
LIMA1-210ENST00000552045 ZBTB38Q8NAP3 1195 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-210ENST00000552045 TMEM87BQ96K49 555 aa8.73□□□□□ -1.01
LIMA1-210ENST00000552045 IQCA1LA6NCM1 817 aa8.72□□□□□ -1.01
LIMA1-210ENST00000552045 OIP5O43482 229 aa8.72□□□□□ -1.01
LIMA1-210ENST00000552045 ADCY3O60266 1144 aa8.72□□□□□ -1.01
LIMA1-210ENST00000552045 MRPL41Q8IXM3 137 aaKnown RBP8.72□□□□□ -1.01
LIMA1-210ENST00000552045 RPUSD2Q8IZ73 545 aaKnown RBP8.72□□□□□ -1.01
LIMA1-210ENST00000552045 SLC26A8Q96RN1 970 aa8.72□□□□□ -1.01
LIMA1-210ENST00000552045 CRIM1Q9NZV1 1036 aa8.72□□□□□ -1.01
LIMA1-210ENST00000552045 PPP1R9AQ9ULJ8 1098 aa8.72□□□□□ -1.01
LIMA1-210ENST00000552045 CD2APQ9Y5K6 639 aa8.72□□□□□ -1.01
LIMA1-210ENST00000552045 NTF4P34130 210 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 BBS9Q3SYG4 887 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 ZC3H12BQ5HYM0 836 aaKnown RBP8.71□□□□□ -1.02
LIMA1-210ENST00000552045 SLC6A19Q695T7 634 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 HID1Q8IV36 788 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 PHACTR4Q8IZ21 702 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 DTWD1Q8N5C7 304 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 ZNF507Q8TCN5 953 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 DCAF11Q8TEB1 546 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 UBASH3BQ8TF42 649 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 SGSM3Q96HU1 749 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 DHRS1Q96LJ7 313 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 METTL14Q9HCE5 456 aaKnown RBP8.71□□□□□ -1.02
LIMA1-210ENST00000552045 PLAAQ9Y263 795 aa8.71□□□□□ -1.02
LIMA1-210ENST00000552045 SHISA8B8ZZ34 492 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 RGS13O14921 159 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 PMS1P54277 932 aaKnown RBP8.7□□□□□ -1.02
LIMA1-210ENST00000552045 AKAP4Q5JQC9 854 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 TMEM192Q8IY95 271 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 RNF214Q8ND24 703 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 SLC6A18Q96N87 628 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 TMPRSS13Q9BYE2 586 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 FBRSQ9HAH7 460 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 CWC22Q9HCG8 908 aaKnown RBP8.7□□□□□ -1.02
LIMA1-210ENST00000552045 DISC1Q9NRI5 854 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 LRRC4BQ9NT99 713 aa8.7□□□□□ -1.02
LIMA1-210ENST00000552045 MARCH6O60337 910 aa8.69□□□□□ -1.02
LIMA1-210ENST00000552045 VIL1P09327 827 aaKnown RBP8.69□□□□□ -1.02
LIMA1-210ENST00000552045 AMPD1P23109 780 aa8.69□□□□□ -1.02
LIMA1-210ENST00000552045 ZNF143P52747 638 aaPredicted RBP8.69□□□□□ -1.02
LIMA1-210ENST00000552045 DUOXA2Q1HG44 320 aa8.69□□□□□ -1.02
LIMA1-210ENST00000552045 PPFIBP1Q86W92 1011 aa8.69□□□□□ -1.02
LIMA1-210ENST00000552045 FANCD2OSQ96PS1 177 aa8.69□□□□□ -1.02
LIMA1-210ENST00000552045 KIF2CQ99661 725 aa8.69□□□□□ -1.02
LIMA1-210ENST00000552045 SUCOQ9UBS9 1254 aaKnown RBP8.69□□□□□ -1.02
LIMA1-210ENST00000552045 CCDC163A0A0D9SF12 145 aa8.68□□□□□ -1.02
LIMA1-210ENST00000552045 AGRPO00253 132 aa8.68□□□□□ -1.02
LIMA1-210ENST00000552045 UBOX5O94941 541 aa8.68□□□□□ -1.02
LIMA1-210ENST00000552045 BCRP11274 1271 aa8.68□□□□□ -1.02
LIMA1-210ENST00000552045 HCLS1P14317 486 aaPredicted RBP8.68□□□□□ -1.02
LIMA1-210ENST00000552045 NKG7Q16617 165 aa8.68□□□□□ -1.02
LIMA1-210ENST00000552045 CCDC74BQ96LY2 380 aa8.68□□□□□ -1.02
LIMA1-210ENST00000552045 RUSC1Q9BVN2 902 aa8.68□□□□□ -1.02
LIMA1-210ENST00000552045 MEGF11A6BM72 1044 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 NAT2P11245 290 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 GBP1P32455 592 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 C21orf62-AS1Q17RA5 79 aa8.67□□□□□ -1.02
LIMA1-210ENST00000552045 SV2CQ496J9 727 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms