RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ANKRD23Q86SG2 305 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.45□□□□□ -0.9
NEK3-201ENST00000550331 SHISA4Q96DD7 197 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 MEIS3Q99687 375 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 IDI2Q9BXS1 227 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 ARHGAP39Q9C0H5 1083 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 USP40Q9NVE5 1235 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 GAKO14976 1311 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 RFX7Q2KHR2 1363 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 A0A0C4DFX4 3053 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 CCER2I3L3R5 266 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 ENTPD3O75355 529 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 ADORA1P30542 326 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 RARSP54136 660 aaKnown RBP9.44□□□□□ -0.9
NEK3-201ENST00000550331 RASGRF1Q13972 1273 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 MVPQ14764 893 aaKnown RBP9.44□□□□□ -0.9
NEK3-201ENST00000550331 MTFR1Q15390 333 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 C6orf132Q5T0Z8 1188 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 C17orf99Q6UX52 265 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 SLF2Q8IX21 1173 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 HTATIP2Q9BUP3 242 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 PA2G4Q9UQ80 394 aaKnown RBP9.44□□□□□ -0.9
NEK3-201ENST00000550331 AKAP2Q9Y2D5 859 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 ADGRA2Q96PE1 1338 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 ATRNL1Q5VV63 1379 aa9.44□□□□□ -0.9
NEK3-201ENST00000550331 A0A1B0GUL7 405 aa9.43□□□□□ -0.9
NEK3-201ENST00000550331 PDHXO00330 501 aa9.43□□□□□ -0.9
NEK3-201ENST00000550331 CXCL11O14625 94 aa9.43□□□□□ -0.9
NEK3-201ENST00000550331 SRGAP3O43295 1099 aa9.43□□□□□ -0.9
NEK3-201ENST00000550331 MOGSQ13724 837 aa9.43□□□□□ -0.9
NEK3-201ENST00000550331 SPTY2D1Q68D10 685 aaPredicted RBP9.43□□□□□ -0.9
NEK3-201ENST00000550331 DZIP1Q86YF9 867 aaKnown RBP9.43□□□□□ -0.9
NEK3-201ENST00000550331 SCYL3Q8IZE3 742 aa9.43□□□□□ -0.9
NEK3-201ENST00000550331 PARK7Q99497 189 aaKnown RBP9.43□□□□□ -0.9
NEK3-201ENST00000550331 NR2E3Q9Y5X4 410 aa9.43□□□□□ -0.9
NEK3-201ENST00000550331 LAMA3Q16787 3333 aa9.43□□□□□ -0.9
NEK3-201ENST00000550331 MGAMO43451 1857 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 MROH7-TTC4A0A0A0MT08 1334 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 PHF20L1A8MW92 1017 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 IPO8O15397 1037 aaKnown RBP9.42□□□□□ -0.9
NEK3-201ENST00000550331 RGS3P49796 1198 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 TIMM10P62072 90 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 MAP3K10Q02779 954 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 ZFPM1Q8IX07 1006 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 NKX2-3Q8TAU0 364 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 XAGE2Q96GT9 111 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 PRO3102Q9H379 93 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 PICK1Q9NRD5 415 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 ABCF2Q9UG63 623 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 SRRDQ9UH36 339 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 CPA4Q9UI42 421 aa9.42□□□□□ -0.9
NEK3-201ENST00000550331 GPR75-ASB3A0A0A6YYF3 556 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 SOX1O00570 391 aaPredicted RBP9.41□□□□□ -0.9
NEK3-201ENST00000550331 ZBTB7BO15156 539 aaPredicted RBP9.41□□□□□ -0.9
NEK3-201ENST00000550331 CTNND1O60716 968 aaKnown RBP9.41□□□□□ -0.9
NEK3-201ENST00000550331 MAP4K4O95819 1239 aaPredicted RBP9.41□□□□□ -0.9
NEK3-201ENST00000550331 GJB1P08034 283 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 CCL5P13501 91 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 TRIM27P14373 513 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 PTPRAP18433 802 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 HOXD10P28358 340 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 GRK4P32298 578 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 BTDP43251 543 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 PSMC4P43686 418 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 TFCP2Q12800 502 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 ERICH6Q7L0X2 663 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 SH3BP5LQ7L8J4 393 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 FASTKD5Q7L8L6 764 aaKnown RBP9.41□□□□□ -0.9
NEK3-201ENST00000550331 ZSCAN29Q8IWY8 852 aaPredicted RBP9.41□□□□□ -0.9
NEK3-201ENST00000550331 RAET1EQ8TD07 263 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 TRIM47Q96LD4 638 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 BIN2Q9UBW5 565 aaPredicted RBP9.41□□□□□ -0.9
NEK3-201ENST00000550331 SLC45A1Q9Y2W3 748 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 AK9Q5TCS8 1911 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 ALPK3Q96L96 1907 aa9.41□□□□□ -0.9
NEK3-201ENST00000550331 A0A0G2JLL6 359 aaPredicted RBP9.4□□□□□ -0.9
NEK3-201ENST00000550331 A0A1W2PPC1 479 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 FAM187AA6NFU0 413 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 DDTLA6NHG4 134 aaPredicted RBP9.4□□□□□ -0.9
NEK3-201ENST00000550331 FMNL1O95466 1100 aaPredicted RBP9.4□□□□□ -0.9
NEK3-201ENST00000550331 GNAI2P04899 355 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 BCRP11274 1271 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 OSBPP22059 807 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 PDE4AP27815 886 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 CTGFP29279 349 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 SLC19A1P41440 591 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 GJA8P48165 433 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 GSTO1P78417 241 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 MECOMQ03112 1051 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 GPAT2Q6NUI2 795 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 ATF7IPQ6VMQ6 1270 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 PRRT2Q7Z6L0 340 aaPredicted RBP9.4□□□□□ -0.9
NEK3-201ENST00000550331 UBE2Q1Q7Z7E8 422 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 PACS2Q86VP3 889 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 RNF208Q9H0X6 261 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 HMG20BQ9P0W2 317 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 AFG3L2Q9Y4W6 797 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 ZHX2Q9Y6X8 837 aa9.4□□□□□ -0.9
NEK3-201ENST00000550331 COL2A1P02458 1487 aaPredicted RBP9.4□□□□□ -0.91
NEK3-201ENST00000550331 MYH13Q9UKX3 1938 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms