RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 CCL15-CCL14A0A0B4J2E2 113 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 MAGEB6P1A0A0J9YX57 407 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 PRMT3O60678 531 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 NEFMP07197 916 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 KLRK1P26718 216 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 ATP1A2P50993 1020 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 ARHGEF6Q15052 776 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 CCL15Q16663 113 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 TTLL5Q6EMB2 1281 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 SH3BP5LQ7L8J4 393 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 ANKRD18AQ8IVF6 992 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 DEFB123Q8N688 67 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 HTATIP2Q9BUP3 242 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 NR2E3Q9Y5X4 410 aa8.43□□□□□ -1.06
LIMA1-204ENST00000549064 A0A1W2PPC1 479 aa8.42□□□□□ -1.06
LIMA1-204ENST00000549064 RBM47A0AV96 593 aaKnown RBP8.42□□□□□ -1.06
LIMA1-204ENST00000549064 CTGFP29279 349 aa8.42□□□□□ -1.06
LIMA1-204ENST00000549064 IREB2P48200 963 aaKnown RBP8.42□□□□□ -1.06
LIMA1-204ENST00000549064 GTF2IP78347 998 aa8.42□□□□□ -1.06
LIMA1-204ENST00000549064 LACTBP83111 547 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-204ENST00000549064 DLGAP5Q15398 846 aa8.42□□□□□ -1.06
LIMA1-204ENST00000549064 SWI5Q1ZZU3 235 aa8.42□□□□□ -1.06
LIMA1-204ENST00000549064 CCDC152Q4G0S7 254 aa8.42□□□□□ -1.06
LIMA1-204ENST00000549064 ANKRD13AQ8IZ07 590 aa8.42□□□□□ -1.06
LIMA1-204ENST00000549064 ZBTB38Q8NAP3 1195 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-204ENST00000549064 VEZTQ9HBM0 779 aa8.42□□□□□ -1.06
LIMA1-204ENST00000549064 BIN2Q9UBW5 565 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-204ENST00000549064 ZNF804BA4D1E1 1349 aa8.42□□□□□ -1.06
LIMA1-204ENST00000549064 F8W031 263 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-204ENST00000549064 LGR5O75473 907 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 FARP2O94887 1054 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-204ENST00000549064 DKK1O94907 266 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 CCL5P13501 91 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 GJA8P48165 433 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 CCT4P50991 539 aaKnown RBP8.41□□□□□ -1.06
LIMA1-204ENST00000549064 KIF22Q14807 665 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 SUPT20HL1Q3ZLR7 823 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-204ENST00000549064 CDAN1Q8IWY9 1227 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 CERS5Q8N5B7 392 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 PRIMPOLQ96LW4 560 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 COA1Q9GZY4 146 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 MINPP1Q9UNW1 487 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 STXBP5LQ9Y2K9 1186 aa8.41□□□□□ -1.06
LIMA1-204ENST00000549064 MGAMO43451 1857 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 MAPK8IP3Q9UPT6 1336 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 SFI1A8K8P3 1242 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 PDE8AO60658 829 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 GJB1P08034 283 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 TRIM28Q13263 835 aaKnown RBP8.4□□□□□ -1.06
LIMA1-204ENST00000549064 RASA3Q14644 834 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 CFAP100Q494V2 611 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 NKX2-3Q8TAU0 364 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 PRMT6Q96LA8 375 aaPredicted RBP8.4□□□□□ -1.06
LIMA1-204ENST00000549064 MYD88Q99836 296 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 RNF208Q9H0X6 261 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 MTMR10Q9NXD2 777 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 PPP2R3BQ9Y5P8 575 aa8.4□□□□□ -1.06
LIMA1-204ENST00000549064 ARAP2Q8WZ64 1704 aa8.4□□□□□ -1.07
LIMA1-204ENST00000549064 SPTBN5Q9NRC6 3674 aaKnown RBP8.4□□□□□ -1.07
LIMA1-204ENST00000549064 TLR2O60603 784 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 ADH1BP00325 375 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 ABL1P00519 1130 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 PCCAP05165 728 aaPredicted RBP8.39□□□□□ -1.07
LIMA1-204ENST00000549064 GRK4P32298 578 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 GTF2A2P52657 109 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 MARSP56192 900 aaKnown RBP8.39□□□□□ -1.07
LIMA1-204ENST00000549064 RIPK4P57078 832 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 VGLL4Q14135 290 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 LINC01559Q495D7 138 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.39□□□□□ -1.07
LIMA1-204ENST00000549064 SIX5Q8N196 739 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 TPCN2Q8NHX9 752 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 U2AF1L4Q8WU68 220 aaKnown RBP8.39□□□□□ -1.07
LIMA1-204ENST00000549064 TRIM47Q96LD4 638 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 PCGF6Q9BYE7 350 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 SRRDQ9UH36 339 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 RIPOR2Q9Y4F9 1068 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 A0A1B0GUL6 1792 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 PRUNE2Q8WUY3 3088 aa8.39□□□□□ -1.07
LIMA1-204ENST00000549064 BTBD19C9JJ37 291 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 PSMC4P43686 418 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 MMP14P50281 582 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 PRMT2P55345 433 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 SEC13P55735 322 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 ZNF211Q13398 564 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-204ENST00000549064 AGERQ15109 404 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 CCDC102BQ68D86 513 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 RAET1EQ8TD07 263 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 CDC5LQ99459 802 aaKnown RBP8.38□□□□□ -1.07
LIMA1-204ENST00000549064 GDF15Q99988 308 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 GREM2Q9H772 168 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 PHAXQ9H814 394 aaKnown RBP8.38□□□□□ -1.07
LIMA1-204ENST00000549064 ANO2Q9NQ90 1003 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 BSDC1Q9NW68 430 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-204ENST00000549064 DBF4Q9UBU7 674 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-204ENST00000549064 CPA4Q9UI42 421 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 ZMYND8Q9ULU4 1186 aaPredicted RBP8.38□□□□□ -1.07
LIMA1-204ENST00000549064 JAG2Q9Y219 1238 aa8.38□□□□□ -1.07
LIMA1-204ENST00000549064 RBM19Q9Y4C8 960 aaKnown RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms