RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ADGRA1Q86SQ6 560 aa15.73■□□□□ 0.11
PTCH1-218ENST00000548945 MAPKAPK5Q8IW41 473 aa15.73■□□□□ 0.11
PTCH1-218ENST00000548945 ANKLE1Q8NAG6 615 aa15.73■□□□□ 0.11
PTCH1-218ENST00000548945 TRIM34Q9BYJ4 488 aa15.73■□□□□ 0.11
PTCH1-218ENST00000548945 DNAJC18Q9H819 358 aa15.73■□□□□ 0.11
PTCH1-218ENST00000548945 TMOD4Q9NZQ9 345 aa15.73■□□□□ 0.11
PTCH1-218ENST00000548945 RBM27Q9P2N5 1060 aaKnown RBP15.73■□□□□ 0.11
PTCH1-218ENST00000548945 GJD2Q9UKL4 321 aa15.73■□□□□ 0.11
PTCH1-218ENST00000548945 TAOK2Q9UL54 1235 aa15.73■□□□□ 0.11
PTCH1-218ENST00000548945 A0A1W2PPC1 479 aa15.72■□□□□ 0.11
PTCH1-218ENST00000548945 USP17L10C9JJH3 530 aa15.72■□□□□ 0.11
PTCH1-218ENST00000548945 HLA-DOAP06340 250 aa15.72■□□□□ 0.11
PTCH1-218ENST00000548945 ZAP70P43403 619 aa15.72■□□□□ 0.11
PTCH1-218ENST00000548945 CRACR2BQ8N4Y2 399 aaPredicted RBP15.72■□□□□ 0.11
PTCH1-218ENST00000548945 GTF3C2Q8WUA4 911 aaPredicted RBP15.72■□□□□ 0.11
PTCH1-218ENST00000548945 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.72■□□□□ 0.11
PTCH1-218ENST00000548945 DBNLQ9UJU6 430 aaKnown RBP15.72■□□□□ 0.11
PTCH1-218ENST00000548945 RPTORQ8N122 1335 aa15.71■□□□□ 0.11
PTCH1-218ENST00000548945 EVI5O60447 810 aa15.71■□□□□ 0.11
PTCH1-218ENST00000548945 FTSJ3Q8IY81 847 aaKnown RBP15.71■□□□□ 0.11
PTCH1-218ENST00000548945 PALD1Q9ULE6 856 aa15.71■□□□□ 0.11
PTCH1-218ENST00000548945 ZBTB21Q9ULJ3 1066 aa15.71■□□□□ 0.11
PTCH1-218ENST00000548945 XRCC5P13010 732 aaKnown RBP15.7■□□□□ 0.1
PTCH1-218ENST00000548945 HERVK_113P62684 666 aa15.7■□□□□ 0.1
PTCH1-218ENST00000548945 JAG1P78504 1218 aa15.7■□□□□ 0.1
PTCH1-218ENST00000548945 NECAB2Q7Z6G3 386 aa15.7■□□□□ 0.1
PTCH1-218ENST00000548945 TRMT44Q8IYL2 757 aaKnown RBP15.7■□□□□ 0.1
PTCH1-218ENST00000548945 GPRC5AQ8NFJ5 357 aa15.7■□□□□ 0.1
PTCH1-218ENST00000548945 SOCS4Q8WXH5 440 aa15.7■□□□□ 0.1
PTCH1-218ENST00000548945 P2RX7Q99572 595 aaKnown RBP15.7■□□□□ 0.1
PTCH1-218ENST00000548945 HMX1Q9NP08 348 aaPredicted RBP15.7■□□□□ 0.1
PTCH1-218ENST00000548945 PIH1D3Q9NQM4 214 aaKnown RBP15.7■□□□□ 0.1
PTCH1-218ENST00000548945 DNAH12Q6ZR08 3092 aa15.7■□□□□ 0.1
PTCH1-218ENST00000548945 CYP7A1P22680 504 aa15.69■□□□□ 0.1
PTCH1-218ENST00000548945 MAPK4P31152 587 aa15.69■□□□□ 0.1
PTCH1-218ENST00000548945 ITPRIPQ8IWB1 547 aa15.69■□□□□ 0.1
PTCH1-218ENST00000548945 EAF2Q96CJ1 260 aaPredicted RBP15.69■□□□□ 0.1
PTCH1-218ENST00000548945 PAWRQ96IZ0 340 aaKnown RBP15.69■□□□□ 0.1
PTCH1-218ENST00000548945 GDF11O95390 407 aa15.68■□□□□ 0.1
PTCH1-218ENST00000548945 MAP3K21Q5TCX8 1036 aa15.68■□□□□ 0.1
PTCH1-218ENST00000548945 TATDN1Q6P1N9 297 aa15.68■□□□□ 0.1
PTCH1-218ENST00000548945 USP17L2Q6R6M4 530 aa15.68■□□□□ 0.1
PTCH1-218ENST00000548945 ERC1Q8IUD2 1116 aa15.68■□□□□ 0.1
PTCH1-218ENST00000548945 NUDT12Q9BQG2 462 aa15.68■□□□□ 0.1
PTCH1-218ENST00000548945 EHD4Q9H223 541 aa15.68■□□□□ 0.1
PTCH1-218ENST00000548945 C1orf115Q9H7X2 142 aa15.68■□□□□ 0.1
PTCH1-218ENST00000548945 TLR7Q9NYK1 1049 aaKnown RBP15.68■□□□□ 0.1
PTCH1-218ENST00000548945 DDX60LQ5H9U9 1706 aaKnown RBP15.68■□□□□ 0.1
PTCH1-218ENST00000548945 IDH1O75874 414 aaKnown RBP15.67■□□□□ 0.1
PTCH1-218ENST00000548945 RLBP1P12271 317 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 ERVK-9P63128 1117 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 ERVK-24P63145 666 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 DYNLL1P63167 89 aaKnown RBP15.67■□□□□ 0.1
PTCH1-218ENST00000548945 PDE3AQ14432 1141 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 TRIB2Q92519 343 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 C12orf42Q96LP6 360 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 NBPF3Q9H094 633 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 CCDC8Q9H0W5 538 aaPredicted RBP15.67■□□□□ 0.1
PTCH1-218ENST00000548945 TXNRD2Q9NNW7 524 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 RBPJLQ9UBG7 517 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 SAP30BPQ9UHR5 308 aaKnown RBP15.67■□□□□ 0.1
PTCH1-218ENST00000548945 SERPINB13Q9UIV8 391 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 OGDHLQ9ULD0 1010 aa15.67■□□□□ 0.1
PTCH1-218ENST00000548945 A0A0C4DFX4 3053 aa15.66■□□□□ 0.1
PTCH1-218ENST00000548945 COL6A3P12111 3177 aa15.66■□□□□ 0.1
PTCH1-218ENST00000548945 GH2P01242 217 aa15.66■□□□□ 0.1
PTCH1-218ENST00000548945 USP5P45974 858 aa15.66■□□□□ 0.1
PTCH1-218ENST00000548945 MAP3K12Q12852 859 aa15.66■□□□□ 0.1
PTCH1-218ENST00000548945 SHROOM1Q2M3G4 852 aaPredicted RBP15.66■□□□□ 0.1
PTCH1-218ENST00000548945 CEP85Q6P2H3 762 aa15.66■□□□□ 0.1
PTCH1-218ENST00000548945 TTC6Q86TZ1 520 aa15.66■□□□□ 0.1
PTCH1-218ENST00000548945 DIS3LQ8TF46 1054 aaKnown RBP15.66■□□□□ 0.1
PTCH1-218ENST00000548945 USP6NLQ92738 828 aa15.66■□□□□ 0.1
PTCH1-218ENST00000548945 EMILIN3Q9NT22 766 aa15.66■□□□□ 0.1
PTCH1-218ENST00000548945 CYP2B6P20813 491 aa15.65■□□□□ 0.1
PTCH1-218ENST00000548945 USP14P54578 494 aa15.65■□□□□ 0.1
PTCH1-218ENST00000548945 TRIM32Q13049 653 aa15.65■□□□□ 0.1
PTCH1-218ENST00000548945 HSP90AB4PQ58FF6 505 aa15.65■□□□□ 0.1
PTCH1-218ENST00000548945 CCAR1Q8IX12 1150 aaKnown RBP15.65■□□□□ 0.1
PTCH1-218ENST00000548945 MAGEB6Q8N7X4 407 aa15.65■□□□□ 0.1
PTCH1-218ENST00000548945 MIGA1Q8NAN2 632 aa15.65■□□□□ 0.1
PTCH1-218ENST00000548945 RABGAP1Q9Y3P9 1069 aa15.65■□□□□ 0.1
PTCH1-218ENST00000548945 NAV1Q8NEY1 1877 aa15.65■□□□□ 0.1
PTCH1-218ENST00000548945 USP17L15C9J2P7 530 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 USP17L13C9JLJ4 530 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 USP17L11C9JVI0 530 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 USP17L18D6R9N7 530 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 USP17L22D6RA61 530 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 USP17L17D6RBQ6 530 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 USP17L19D6RCP7 530 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 USP17L20D6RJB6 530 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 PRKAR2AP13861 404 aaKnown RBP15.64■□□□□ 0.09
PTCH1-218ENST00000548945 ZKSCAN1P17029 563 aaPredicted RBP15.64■□□□□ 0.09
PTCH1-218ENST00000548945 BMP8BP34820 402 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 RGS2P41220 211 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 MNX1P50219 401 aaPredicted RBP15.64■□□□□ 0.09
PTCH1-218ENST00000548945 HNRNPUQ00839 825 aaKnown RBP eCLIP15.64■□□□□ 0.09
PTCH1-218ENST00000548945 USP17L24Q0WX57 530 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 Q3C1V9 767 aa15.64■□□□□ 0.09
PTCH1-218ENST00000548945 MORN1Q5T089 497 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms