RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 FAM9BQ8IZU0 186 aa16.72■□□□□ 0.27
CDX2-202ENST00000548877 TMOD4Q9NZQ9 345 aa16.72■□□□□ 0.27
CDX2-202ENST00000548877 FOCADQ5VW36 1801 aa16.72■□□□□ 0.27
CDX2-202ENST00000548877 MAST2Q6P0Q8 1798 aa16.72■□□□□ 0.27
CDX2-202ENST00000548877 CDK5RAP2Q96SN8 1893 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 ARID4AP29374 1257 aaPredicted RBP16.71■□□□□ 0.27
CDX2-202ENST00000548877 RGS2P41220 211 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 ERVK-9P63128 1117 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 ERVK-24P63145 666 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 PDE3AQ14432 1141 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 Q3C1V9 767 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 POTEEQ6S8J3 1075 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 FOXP4Q8IVH2 680 aaPredicted RBP16.71■□□□□ 0.27
CDX2-202ENST00000548877 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.71■□□□□ 0.27
CDX2-202ENST00000548877 TEX11Q8IYF3 940 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 SPATA5Q8NB90 893 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 GUCD1Q96NT3 240 aa16.71■□□□□ 0.27
CDX2-202ENST00000548877 CCND3P30281 292 aaPredicted RBP16.7■□□□□ 0.26
CDX2-202ENST00000548877 PPP4CP60510 307 aa16.7■□□□□ 0.26
CDX2-202ENST00000548877 JAG1P78504 1218 aa16.7■□□□□ 0.26
CDX2-202ENST00000548877 TFCP2Q12800 502 aa16.7■□□□□ 0.26
CDX2-202ENST00000548877 GPR142Q7Z601 462 aa16.7■□□□□ 0.26
CDX2-202ENST00000548877 APBA2Q99767 749 aa16.7■□□□□ 0.26
CDX2-202ENST00000548877 DNAJC18Q9H819 358 aa16.7■□□□□ 0.26
CDX2-202ENST00000548877 SMC4Q9NTJ3 1288 aa16.7■□□□□ 0.26
CDX2-202ENST00000548877 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.7■□□□□ 0.26
CDX2-202ENST00000548877 USP17L10C9JJH3 530 aa16.69■□□□□ 0.26
CDX2-202ENST00000548877 PEX10O60683 326 aa16.69■□□□□ 0.26
CDX2-202ENST00000548877 IGSF3O75054 1194 aa16.69■□□□□ 0.26
CDX2-202ENST00000548877 PI16Q6UXB8 463 aa16.69■□□□□ 0.26
CDX2-202ENST00000548877 TBC1D9Q6ZT07 1266 aa16.69■□□□□ 0.26
CDX2-202ENST00000548877 PLEKHH3Q7Z736 793 aa16.69■□□□□ 0.26
CDX2-202ENST00000548877 PORCNQ9H237 461 aa16.69■□□□□ 0.26
CDX2-202ENST00000548877 CT47B1P0C2W7 299 aaPredicted RBP16.68■□□□□ 0.26
CDX2-202ENST00000548877 MDM2Q00987 491 aaPredicted RBP16.68■□□□□ 0.26
CDX2-202ENST00000548877 MAP2K5Q13163 448 aa16.68■□□□□ 0.26
CDX2-202ENST00000548877 CCL14Q16627 93 aa16.68■□□□□ 0.26
CDX2-202ENST00000548877 TRMT2AQ8IZ69 625 aaKnown RBP16.68■□□□□ 0.26
CDX2-202ENST00000548877 SH3RF3Q8TEJ3 882 aaPredicted RBP16.68■□□□□ 0.26
CDX2-202ENST00000548877 MEIS3Q99687 375 aa16.68■□□□□ 0.26
CDX2-202ENST00000548877 API5Q9BZZ5 524 aaKnown RBP16.68■□□□□ 0.26
CDX2-202ENST00000548877 RAI14Q9P0K7 980 aa16.68■□□□□ 0.26
CDX2-202ENST00000548877 IGHA2P01877 340 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 CENPBP07199 599 aaPredicted RBP16.67■□□□□ 0.26
CDX2-202ENST00000548877 HOXC6P09630 235 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 PLCG2P16885 1265 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 MCAMP43121 646 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 C12orf42Q96LP6 360 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 EMILIN3Q9NT22 766 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 ZBTB21Q9ULJ3 1066 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 NOB1Q9ULX3 412 aaKnown RBP16.67■□□□□ 0.26
CDX2-202ENST00000548877 RABGAP1Q9Y3P9 1069 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 LTBP2Q14767 1821 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 EYSQ5T1H1 3165 aa16.67■□□□□ 0.26
CDX2-202ENST00000548877 VCANP13611 3396 aa16.66■□□□□ 0.26
CDX2-202ENST00000548877 SRGAP3O43295 1099 aa16.66■□□□□ 0.26
CDX2-202ENST00000548877 MSCO60682 206 aa16.66■□□□□ 0.26
CDX2-202ENST00000548877 BAG3O95817 575 aa16.66■□□□□ 0.26
CDX2-202ENST00000548877 UQCRFS1P1P0C7P4 283 aa16.66■□□□□ 0.26
CDX2-202ENST00000548877 USP17L2Q6R6M4 530 aa16.66■□□□□ 0.26
CDX2-202ENST00000548877 EDC3Q96F86 508 aaKnown RBP16.66■□□□□ 0.26
CDX2-202ENST00000548877 NEUROD6Q96NK8 337 aa16.66■□□□□ 0.26
CDX2-202ENST00000548877 RLFQ13129 1914 aa16.66■□□□□ 0.26
CDX2-202ENST00000548877 CCER2I3L3R5 266 aa16.65■□□□□ 0.26
CDX2-202ENST00000548877 CNMDO75829 334 aa16.65■□□□□ 0.26
CDX2-202ENST00000548877 GLRX3O76003 335 aaKnown RBP16.65■□□□□ 0.26
CDX2-202ENST00000548877 GNAI3P08754 354 aa16.65■□□□□ 0.26
CDX2-202ENST00000548877 LBX2Q6XYB7 198 aa16.65■□□□□ 0.26
CDX2-202ENST00000548877 LPAR1Q92633 364 aa16.65■□□□□ 0.26
CDX2-202ENST00000548877 LBHD1Q9BQE6 289 aaPredicted RBP16.65■□□□□ 0.26
CDX2-202ENST00000548877 NOL10Q9BSC4 688 aaKnown RBP16.65■□□□□ 0.26
CDX2-202ENST00000548877 LRP2BPQ9P2M1 347 aa16.65■□□□□ 0.26
CDX2-202ENST00000548877 PRUNE2Q8WUY3 3088 aa16.65■□□□□ 0.26
CDX2-202ENST00000548877 FLT1P17948 1338 aa16.65■□□□□ 0.26
CDX2-202ENST00000548877 SLC15A5A6NIM6 579 aa16.64■□□□□ 0.25
CDX2-202ENST00000548877 DNM1LO00429 736 aa16.64■□□□□ 0.25
CDX2-202ENST00000548877 CCNA1P78396 465 aa16.64■□□□□ 0.25
CDX2-202ENST00000548877 SHROOM1Q2M3G4 852 aaPredicted RBP16.64■□□□□ 0.25
CDX2-202ENST00000548877 GORABQ5T7V8 394 aa16.64■□□□□ 0.25
CDX2-202ENST00000548877 MFSD14CQ5VZR4 134 aa16.64■□□□□ 0.25
CDX2-202ENST00000548877 CCAR1Q8IX12 1150 aaKnown RBP16.64■□□□□ 0.25
CDX2-202ENST00000548877 TGFBRAP1Q8WUH2 860 aa16.64■□□□□ 0.25
CDX2-202ENST00000548877 SENP6Q9GZR1 1112 aaPredicted RBP16.64■□□□□ 0.25
CDX2-202ENST00000548877 AATFQ9NY61 560 aaKnown RBP eCLIP16.64■□□□□ 0.25
CDX2-202ENST00000548877 FLRT1Q9NZU1 646 aa16.64■□□□□ 0.25
CDX2-202ENST00000548877 DDX20Q9UHI6 824 aaKnown RBP16.64■□□□□ 0.25
CDX2-202ENST00000548877 USP17L15C9J2P7 530 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 USP17L13C9JLJ4 530 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 USP17L11C9JVI0 530 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 USP17L18D6R9N7 530 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 USP17L22D6RA61 530 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 USP17L17D6RBQ6 530 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 USP17L19D6RCP7 530 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 USP17L20D6RJB6 530 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 PTPREP23469 700 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 USP17L24Q0WX57 530 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 NAA16Q6N069 864 aaPredicted RBP16.63■□□□□ 0.25
CDX2-202ENST00000548877 ARHGAP45Q92619 1136 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 PAGR1Q9BTK6 254 aa16.63■□□□□ 0.25
CDX2-202ENST00000548877 MYO5AQ9Y4I1 1855 aaKnown RBP16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms