RNA–Protein interactions for RNA: ENST00000547715.1

PTPRB-205, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 2

Gene PTPRB, Length 639 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-205ENST00000547715 PI16Q6UXB8 463 aa17.92■□□□□ 0.46
PTPRB-205ENST00000547715 TBC1D9Q6ZT07 1266 aa17.92■□□□□ 0.46
PTPRB-205ENST00000547715 GPR142Q7Z601 462 aa17.92■□□□□ 0.46
PTPRB-205ENST00000547715 TEX11Q8IYF3 940 aa17.92■□□□□ 0.46
PTPRB-205ENST00000547715 USP6NLQ92738 828 aa17.92■□□□□ 0.46
PTPRB-205ENST00000547715 PAGR1Q9BTK6 254 aa17.92■□□□□ 0.46
PTPRB-205ENST00000547715 SENP6Q9GZR1 1112 aaPredicted RBP17.92■□□□□ 0.46
PTPRB-205ENST00000547715 PORCNQ9H237 461 aa17.92■□□□□ 0.46
PTPRB-205ENST00000547715 RAI14Q9P0K7 980 aa17.92■□□□□ 0.46
PTPRB-205ENST00000547715 ZNF521Q96K83 1311 aa17.92■□□□□ 0.46
PTPRB-205ENST00000547715 CDK5RAP2Q96SN8 1893 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 ANP32CO43423 234 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 ERVK-9P63128 1117 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 ERVK-24P63145 666 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 ZNF697Q5TEC3 545 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 NEUROD6Q96NK8 337 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 APBA2Q99767 749 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 CWC22Q9HCG8 908 aaKnown RBP17.91■□□□□ 0.46
PTPRB-205ENST00000547715 HMG20BQ9P0W2 317 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 PI4KBQ9UBF8 816 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 AKAP2Q9Y2D5 859 aa17.91■□□□□ 0.46
PTPRB-205ENST00000547715 C19orf81C9J6K1 198 aa17.9■□□□□ 0.46
PTPRB-205ENST00000547715 USP17L10C9JJH3 530 aa17.9■□□□□ 0.46
PTPRB-205ENST00000547715 TFCP2Q12800 502 aa17.9■□□□□ 0.46
PTPRB-205ENST00000547715 MORN1Q5T089 497 aa17.9■□□□□ 0.46
PTPRB-205ENST00000547715 PLEKHH3Q7Z736 793 aa17.9■□□□□ 0.46
PTPRB-205ENST00000547715 SPATA5Q8NB90 893 aa17.9■□□□□ 0.46
PTPRB-205ENST00000547715 SH3RF3Q8TEJ3 882 aaPredicted RBP17.9■□□□□ 0.46
PTPRB-205ENST00000547715 SMC4Q9NTJ3 1288 aa17.9■□□□□ 0.46
PTPRB-205ENST00000547715 HDAC5Q9UQL6 1122 aa17.9■□□□□ 0.46
PTPRB-205ENST00000547715 LTBP2Q14767 1821 aa17.89■□□□□ 0.45
PTPRB-205ENST00000547715 ATN1P54259 1190 aaPredicted RBP17.89■□□□□ 0.45
PTPRB-205ENST00000547715 JAG1P78504 1218 aa17.89■□□□□ 0.45
PTPRB-205ENST00000547715 GORABQ5T7V8 394 aa17.89■□□□□ 0.45
PTPRB-205ENST00000547715 NOL10Q9BSC4 688 aaKnown RBP17.89■□□□□ 0.45
PTPRB-205ENST00000547715 DHX36Q9H2U1 1008 aaKnown RBP17.89■□□□□ 0.45
PTPRB-205ENST00000547715 PRKAG2Q9UGJ0 569 aa17.89■□□□□ 0.45
PTPRB-205ENST00000547715 FOCADQ5VW36 1801 aa17.88■□□□□ 0.45
PTPRB-205ENST00000547715 GDF11O95390 407 aa17.88■□□□□ 0.45
PTPRB-205ENST00000547715 SHROOM1Q2M3G4 852 aaPredicted RBP17.88■□□□□ 0.45
PTPRB-205ENST00000547715 ALDH1L2Q3SY69 923 aa17.88■□□□□ 0.45
PTPRB-205ENST00000547715 CRACR2BQ8N4Y2 399 aaPredicted RBP17.88■□□□□ 0.45
PTPRB-205ENST00000547715 TRIM34Q9BYJ4 488 aa17.88■□□□□ 0.45
PTPRB-205ENST00000547715 LRP2BPQ9P2M1 347 aa17.88■□□□□ 0.45
PTPRB-205ENST00000547715 TTC28Q96AY4 2481 aa17.87■□□□□ 0.45
PTPRB-205ENST00000547715 CNGA1P29973 690 aa17.87■□□□□ 0.45
PTPRB-205ENST00000547715 MAP2K5Q13163 448 aa17.87■□□□□ 0.45
PTPRB-205ENST00000547715 GTF3C2Q8WUA4 911 aaPredicted RBP17.87■□□□□ 0.45
PTPRB-205ENST00000547715 EDC3Q96F86 508 aaKnown RBP17.87■□□□□ 0.45
PTPRB-205ENST00000547715 CDX2Q99626 313 aaPredicted RBP17.87■□□□□ 0.45
PTPRB-205ENST00000547715 DNAJC18Q9H819 358 aa17.87■□□□□ 0.45
PTPRB-205ENST00000547715 AATFQ9NY61 560 aaKnown RBP eCLIP17.87■□□□□ 0.45
PTPRB-205ENST00000547715 NDUFB9Q9Y6M9 179 aa17.87■□□□□ 0.45
PTPRB-205ENST00000547715 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.87■□□□□ 0.45
PTPRB-205ENST00000547715 E9PSI1 815 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 WDR78Q5VTH9 848 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 MFSD14CQ5VZR4 134 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 POTEEQ6S8J3 1075 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 MAPKAPK5Q8IW41 473 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 TGFBRAP1Q8WUH2 860 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 MEIS3Q99687 375 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 EMILIN3Q9NT22 766 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 FLRT1Q9NZU1 646 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 DDX20Q9UHI6 824 aaKnown RBP17.86■□□□□ 0.45
PTPRB-205ENST00000547715 ZBTB21Q9ULJ3 1066 aa17.86■□□□□ 0.45
PTPRB-205ENST00000547715 SRGAP3O43295 1099 aa17.85■□□□□ 0.45
PTPRB-205ENST00000547715 GLRX3O76003 335 aaKnown RBP17.85■□□□□ 0.45
PTPRB-205ENST00000547715 BAG3O95817 575 aa17.85■□□□□ 0.45
PTPRB-205ENST00000547715 RLFQ13129 1914 aa17.85■□□□□ 0.45
PTPRB-205ENST00000547715 FOXP4Q8IVH2 680 aaPredicted RBP17.85■□□□□ 0.45
PTPRB-205ENST00000547715 MAFAQ8NHW3 353 aaPredicted RBP17.85■□□□□ 0.45
PTPRB-205ENST00000547715 PALD1Q9ULE6 856 aa17.85■□□□□ 0.45
PTPRB-205ENST00000547715 MYO5AQ9Y4I1 1855 aaKnown RBP17.84■□□□□ 0.45
PTPRB-205ENST00000547715 MUC3AQ02505 3323 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 FLT1P17948 1338 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 MSCO60682 206 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 ARID4AP29374 1257 aaPredicted RBP17.84■□□□□ 0.45
PTPRB-205ENST00000547715 MCAMP43121 646 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 RTP1P59025 263 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 CCNA1P78396 465 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 ZYXQ15942 572 aaKnown RBP17.84■□□□□ 0.45
PTPRB-205ENST00000547715 NAA16Q6N069 864 aaPredicted RBP17.84■□□□□ 0.45
PTPRB-205ENST00000547715 USP17L2Q6R6M4 530 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 LPAR1Q92633 364 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 GINM1Q9NU53 330 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 NOB1Q9ULX3 412 aaKnown RBP17.84■□□□□ 0.45
PTPRB-205ENST00000547715 ATP11BQ9Y2G3 1177 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 RABGAP1Q9Y3P9 1069 aa17.84■□□□□ 0.45
PTPRB-205ENST00000547715 DNM1LO00429 736 aa17.83■□□□□ 0.44
PTPRB-205ENST00000547715 PLCG2P16885 1265 aa17.83■□□□□ 0.44
PTPRB-205ENST00000547715 ATP2B2Q01814 1243 aa17.83■□□□□ 0.44
PTPRB-205ENST00000547715 SHHQ15465 462 aa17.83■□□□□ 0.44
PTPRB-205ENST00000547715 METTL16Q86W50 562 aaKnown RBP17.83■□□□□ 0.44
PTPRB-205ENST00000547715 SEMA6BQ9H3T3 888 aa17.83■□□□□ 0.44
PTPRB-205ENST00000547715 IVNS1ABPQ9Y6Y0 642 aa17.83■□□□□ 0.44
PTPRB-205ENST00000547715 MYH1P12882 1939 aa17.82■□□□□ 0.44
PTPRB-205ENST00000547715 CNMDO75829 334 aa17.82■□□□□ 0.44
PTPRB-205ENST00000547715 CYP2C19P33261 490 aa17.82■□□□□ 0.44
PTPRB-205ENST00000547715 C9orf50Q5SZB4 431 aa17.82■□□□□ 0.44
PTPRB-205ENST00000547715 FEZ1Q99689 392 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms