RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 VEGFBP49765 207 aa16.35■□□□□ 0.21
PTCH1-213ENST00000546820 RASAL3Q86YV0 1011 aa16.35■□□□□ 0.21
PTCH1-213ENST00000546820 REM2Q8IYK8 340 aaPredicted RBP16.35■□□□□ 0.21
PTCH1-213ENST00000546820 STK11IPQ8N1F8 1099 aa16.35■□□□□ 0.21
PTCH1-213ENST00000546820 MAP4K1Q92918 833 aa16.35■□□□□ 0.21
PTCH1-213ENST00000546820 IL25Q9H293 177 aa16.35■□□□□ 0.21
PTCH1-213ENST00000546820 RNF41Q9H4P4 317 aaPredicted RBP16.35■□□□□ 0.21
PTCH1-213ENST00000546820 AS3MTQ9HBK9 375 aa16.35■□□□□ 0.21
PTCH1-213ENST00000546820 ANO2Q9NQ90 1003 aa16.35■□□□□ 0.21
PTCH1-213ENST00000546820 REC8O95072 547 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 GDF11O95390 407 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 PCP11498 1178 aaKnown RBP16.34■□□□□ 0.21
PTCH1-213ENST00000546820 PTPRAP18433 802 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 INHBEP58166 350 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 PTH1RQ03431 593 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 EVX2Q03828 476 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 CTDSPL2Q05D32 466 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 DNAJC5GQ8N7S2 189 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 SLC44A5Q8NCS7 719 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 OTUD5Q96G74 571 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 WNK4Q96J92 1243 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 ZHX2Q9Y6X8 837 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 ROBO3Q96MS0 1386 aa16.34■□□□□ 0.21
PTCH1-213ENST00000546820 FAM155AB1AL88 458 aaPredicted RBP16.33■□□□□ 0.2
PTCH1-213ENST00000546820 CXCL11O14625 94 aa16.33■□□□□ 0.2
PTCH1-213ENST00000546820 GH2P01242 217 aa16.33■□□□□ 0.2
PTCH1-213ENST00000546820 NT5C2P49902 561 aa16.33■□□□□ 0.2
PTCH1-213ENST00000546820 HAND2P61296 217 aa16.33■□□□□ 0.2
PTCH1-213ENST00000546820 PPIL2Q13356 520 aa16.33■□□□□ 0.2
PTCH1-213ENST00000546820 RRP1BQ14684 758 aaKnown RBP16.33■□□□□ 0.2
PTCH1-213ENST00000546820 MFSD6Q6ZSS7 791 aa16.33■□□□□ 0.2
PTCH1-213ENST00000546820 TMEM179Q6ZVK1 233 aa16.33■□□□□ 0.2
PTCH1-213ENST00000546820 ZBTB21Q9ULJ3 1066 aa16.33■□□□□ 0.2
PTCH1-213ENST00000546820 DDX60LQ5H9U9 1706 aaKnown RBP16.33■□□□□ 0.2
PTCH1-213ENST00000546820 MANSC4A6NHS7 340 aaPredicted RBP16.32■□□□□ 0.2
PTCH1-213ENST00000546820 SMIM22K7EJ46 135 aa16.32■□□□□ 0.2
PTCH1-213ENST00000546820 SIPA1L1O43166 1804 aa16.32■□□□□ 0.2
PTCH1-213ENST00000546820 GTF2A2P52657 109 aa16.32■□□□□ 0.2
PTCH1-213ENST00000546820 SNAPC2Q13487 334 aa16.32■□□□□ 0.2
PTCH1-213ENST00000546820 RAB3GAP1Q15042 981 aa16.32■□□□□ 0.2
PTCH1-213ENST00000546820 AKNAD1Q5T1N1 836 aa16.32■□□□□ 0.2
PTCH1-213ENST00000546820 LSG1Q9H089 658 aaKnown RBP16.32■□□□□ 0.2
PTCH1-213ENST00000546820 TOMM22Q9NS69 142 aa16.32■□□□□ 0.2
PTCH1-213ENST00000546820 PRDM1O75626 825 aa16.31■□□□□ 0.2
PTCH1-213ENST00000546820 FGRP09769 529 aa16.31■□□□□ 0.2
PTCH1-213ENST00000546820 KIF23Q02241 960 aaPredicted RBP16.31■□□□□ 0.2
PTCH1-213ENST00000546820 SREBF2Q12772 1141 aa16.31■□□□□ 0.2
PTCH1-213ENST00000546820 MKRN3Q13064 507 aaKnown RBP16.31■□□□□ 0.2
PTCH1-213ENST00000546820 RNF20Q5VTR2 975 aa16.31■□□□□ 0.2
PTCH1-213ENST00000546820 ZNF280CQ8ND82 737 aa16.31■□□□□ 0.2
PTCH1-213ENST00000546820 STAG1Q8WVM7 1258 aa16.31■□□□□ 0.2
PTCH1-213ENST00000546820 WDR18Q9BV38 432 aa16.31■□□□□ 0.2
PTCH1-213ENST00000546820 AFG3L2Q9Y4W6 797 aa16.31■□□□□ 0.2
PTCH1-213ENST00000546820 RBM8AQ9Y5S9 174 aaKnown RBP16.31■□□□□ 0.2
PTCH1-213ENST00000546820 TSPY2A6NKD2 308 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 IRF6O14896 467 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 ORC4O43929 436 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 AOC2O75106 756 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 TSPY3P0CV98 308 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 TSPY8P0CW00 308 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 CETPP11597 493 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 AKR1B1P15121 316 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 RASA1P20936 1047 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 TFAP4Q01664 338 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 TRDNQ13061 729 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 PPP4R3BQ5MIZ7 849 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 CNKSR2Q8WXI2 1034 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 KRT23Q9C075 422 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 CNNM2Q9H8M5 875 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 KANSL2Q9H9L4 492 aa16.3■□□□□ 0.2
PTCH1-213ENST00000546820 C19orf81C9J6K1 198 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 EPB41L2O43491 1005 aaKnown RBP16.29■□□□□ 0.2
PTCH1-213ENST00000546820 RANBP6O60518 1105 aaKnown RBP16.29■□□□□ 0.2
PTCH1-213ENST00000546820 GJA5P36382 358 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 JAG1P78504 1218 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 MAP2K1Q02750 393 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-213ENST00000546820 SPP2Q13103 211 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 SEPT2Q15019 361 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 RRP12Q5JTH9 1297 aaKnown RBP16.29■□□□□ 0.2
PTCH1-213ENST00000546820 OTUD7BQ6GQQ9 843 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 FASTKD5Q7L8L6 764 aaKnown RBP16.29■□□□□ 0.2
PTCH1-213ENST00000546820 NEDD1Q8NHV4 660 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 ESR2Q92731 530 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 ARHGEF10LQ9HCE6 1279 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 KCNH4Q9UQ05 1017 aa16.29■□□□□ 0.2
PTCH1-213ENST00000546820 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.29■□□□□ 0.2
PTCH1-213ENST00000546820 OTOFQ9HC10 1997 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 TRIM75PA6NK02 468 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 USP17L10C9JJH3 530 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 TM4SF4P48230 202 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 NECTIN1Q15223 517 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 BEGAINQ9BUH8 593 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 SH2D4AQ9H788 454 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 INCENPQ9NQS7 918 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 DOCK1Q14185 1865 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 LAMB1P07942 1786 aa16.28■□□□□ 0.2
PTCH1-213ENST00000546820 CCL15-CCL14A0A0B4J2E2 113 aa16.27■□□□□ 0.2
PTCH1-213ENST00000546820 CYP21A2P08686 494 aa16.27■□□□□ 0.2
PTCH1-213ENST00000546820 ZKSCAN1P17029 563 aaPredicted RBP16.27■□□□□ 0.2
PTCH1-213ENST00000546820 USP14P54578 494 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms