RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 C6orf229H3BNL8 230 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 GNPATO15228 680 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 HLA-DOAP06340 250 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 TTLL11Q8NHH1 800 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 CLIC6Q96NY7 704 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 ALS2CR12Q96Q35 445 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS50-220ENST00000544910 PLA2G12BQ9BX93 195 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 VPS54Q9P1Q0 977 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 KIF13AQ9H1H9 1805 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 PARP1P09874 1014 aaKnown RBP6.54□□□□□ -1.36
VPS50-220ENST00000544910 KARSQ15046 597 aaKnown RBP6.54□□□□□ -1.36
VPS50-220ENST00000544910 SARM1Q6SZW1 724 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 STOX1Q6ZVD7 989 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 FANCBQ8NB91 859 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 KIAA1524Q8TCG1 905 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 RBM17Q96I25 401 aaKnown RBP6.54□□□□□ -1.36
VPS50-220ENST00000544910 FOXP1Q9H334 677 aaPredicted RBP6.54□□□□□ -1.36
VPS50-220ENST00000544910 EXOSC10Q01780 885 aaKnown RBP6.54□□□□□ -1.36
VPS50-220ENST00000544910 CMTR1Q8N1G2 835 aaKnown RBP6.54□□□□□ -1.36
VPS50-220ENST00000544910 GPATCH11Q8N954 259 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 IGSF22Q8N9C0 903 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 JAG2Q9Y219 1238 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 NEDD4P46934 1319 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 NFAT5O94916 1531 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 IKBKBO14920 756 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 PRDM1O75626 825 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 GTF2F1P35269 517 aaKnown RBP eCLIP6.54□□□□□ -1.36
VPS50-220ENST00000544910 ASIC1P78348 528 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 MAPK8IP2Q13387 824 aaPredicted RBP6.54□□□□□ -1.36
VPS50-220ENST00000544910 HLFQ16534 295 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 TBC1D10CQ8IV04 446 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 TRIML1Q8N9V2 468 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 NAA15Q9BXJ9 866 aaKnown RBP6.54□□□□□ -1.36
VPS50-220ENST00000544910 SAP30BPQ9UHR5 308 aaKnown RBP6.54□□□□□ -1.36
VPS50-220ENST00000544910 TNKSO95271 1327 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 SLIT3O75094 1523 aa6.54□□□□□ -1.36
VPS50-220ENST00000544910 RGPD8O14715 1765 aaPredicted RBP6.53□□□□□ -1.36
VPS50-220ENST00000544910 CYLC1P35663 651 aaPredicted RBP6.53□□□□□ -1.36
VPS50-220ENST00000544910 PLCD1P51178 756 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 FAM193AP78312 1265 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 PPP2R3AQ06190 1150 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CKAP4Q07065 602 aaKnown RBP6.53□□□□□ -1.36
VPS50-220ENST00000544910 LCORLQ8N3X6 602 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 SDR42E1Q8WUS8 393 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 C8orf37Q96NL8 207 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 TFCP2L1Q9NZI6 479 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CTAGE15A4D2H0 777 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 ARHGAP6O43182 974 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 MMP1P03956 469 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CTAGE8P0CG41 777 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 PCP11498 1178 aaKnown RBP6.53□□□□□ -1.36
VPS50-220ENST00000544910 TRIM21P19474 475 aaKnown RBP6.53□□□□□ -1.36
VPS50-220ENST00000544910 GNA11P29992 359 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 GYG1P46976 350 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 PAK1Q13153 545 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 DPCR1Q3MIW9 517 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CTAGE6Q86UF2 777 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CERS3Q8IU89 383 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CTAGE4Q8IX94 777 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 TAF4BQ92750 862 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CUL5Q93034 780 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 BPIFA3Q9BQP9 254 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 DCCP43146 1447 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 POLR3GO15318 223 aaPredicted RBP6.53□□□□□ -1.36
VPS50-220ENST00000544910 PICALMQ13492 652 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CCDC40Q4G0X9 1142 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 IL17RAQ96F46 866 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 PPP1R13BQ96KQ4 1090 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 LZTFL1Q9NQ48 299 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 NFE2L3Q9Y4A8 694 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 STK36Q9NRP7 1315 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CCT6AP40227 531 aaKnown RBP6.53□□□□□ -1.36
VPS50-220ENST00000544910 ELF2Q15723 593 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CYP26C1Q6V0L0 522 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CYB5R4Q7L1T6 521 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 DHX40Q8IX18 779 aaKnown RBP6.53□□□□□ -1.36
VPS50-220ENST00000544910 LRRC37A3O60309 1634 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 U2AF2P26368 475 aaKnown RBP eCLIP6.53□□□□□ -1.365e-6■■■□□ 19.2
VPS50-220ENST00000544910 TUBB4BP68371 445 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 KRT83P78385 493 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 SYCP1Q15431 976 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 FAM47AQ5JRC9 791 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 ZNF569Q5MCW4 686 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 TRMT44Q8IYL2 757 aaKnown RBP6.53□□□□□ -1.36
VPS50-220ENST00000544910 WDR66Q8TBY9 1149 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 KAZALD1Q96I82 304 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 LZTS2Q9BRK4 669 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 CENPHQ9H3R5 247 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 SEC31BQ9NQW1 1179 aa6.53□□□□□ -1.36
VPS50-220ENST00000544910 SEMA3EO15041 775 aa6.52□□□□□ -1.37
VPS50-220ENST00000544910 TRAPPC3LQ5T215 181 aa6.52□□□□□ -1.37
VPS50-220ENST00000544910 RESP18Q5W5W9 173 aa6.52□□□□□ -1.37
VPS50-220ENST00000544910 SPECC1LQ69YQ0 1117 aa6.52□□□□□ -1.37
VPS50-220ENST00000544910 ZSWIM4Q9H7M6 989 aa6.52□□□□□ -1.37
VPS50-220ENST00000544910 CCNL1Q9UK58 526 aaPredicted RBP6.52□□□□□ -1.37
VPS50-220ENST00000544910 TTF2Q9UNY4 1162 aaKnown RBP6.52□□□□□ -1.37
VPS50-220ENST00000544910 BTBD18B2RXH4 712 aa6.52□□□□□ -1.37
VPS50-220ENST00000544910 ARID4AP29374 1257 aaPredicted RBP6.52□□□□□ -1.37
VPS50-220ENST00000544910 PPP1R2P41236 205 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms